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SRX6357934: GSM3903824: PfMaf1-OE-2.5_T_rep1_RNA-seq; Plasmodium falciparum; RNA-Seq
1 ILLUMINA (Illumina HiSeq X Ten) run: 24.6M spots, 7.4G bases, 2.9Gb downloads

Submitted by: NCBI (GEO)
Study: RNA_seq data for Rrp6 project analysis in malaria (Plasmodium falciparum)
show Abstracthide Abstract
We carried out strand-specific RNA-seq libraries followed by deep sequencing (RNA-seq) to explore the transcriptional profile of the PfRrp6-DD-1C,PfRrp6-DD-1B,PfRrp6-DD-4C,WT 3D7-G7, WT NF54 and PfMaf1-OE lines. Overall design: The RNA-seq assay was carried out to detect the transcriptional profiles in PfRrp6-DD three clones and PfMaf1-OE line with WT 3D7-G7, NF54 and vector lines as control.
Sample: PfMaf1-OE-2.5_T_rep1_RNA-seq
SAMN12128791 • SRS5020600 • All experiments • All runs
Library:
Instrument: Illumina HiSeq X Ten
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Highly synchronous parasites were harvested at the ring stage (10 h after invasion), Total RNA was isolated using TRIzol (Life) according to the manufacturer's manual and further purified using the Direct-zol RNA Kit (ZYMO RESEARCH) for removal of gDNA. Residual gDNA was digested with TURBO DNA-freeTM DNaseI (Ambion) and the RNA was quantified by NanoDrop. The RNA isolation, mRNA enrichment and library construction were performed as described using 15 cycles of library amplification. The mRNA was enriched by poly(A) selection with the KAPA mRNA Capture Beads (KAPA), and fragmented to about 300–400 nucleotides (nt) in length, then all subsequent steps were performed in accordance with an KAPA Stranded mRNA-Seq Kit Illumina platform (KAPABIOSYSTEMS KK8421-96 libraries).
Experiment attributes:
GEO Accession: GSM3903824
Links:
Runs: 1 run, 24.6M spots, 7.4G bases, 2.9Gb
Run# of Spots# of BasesSizePublished
SRR959214824,575,9227.4G2.9Gb2020-01-02

ID:
8414024

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