U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX6099369: GSM3900144: shZc-UT_S15749; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 55.9M spots, 2.9G bases, 1.8Gb downloads

Submitted by: NCBI (GEO)
Study: A first exon termination checkpoint that preferentially suppresses extragenic transcription [RNASEQ1_BMDM_4sU]
show Abstracthide Abstract
Wdr82 and Zc3h4 repress transcription at extragenic sites. Overall design: Transcriptome analysis to measure transcription in cells depleted of Wdr82, Zc3h4or other known termination factors.
Sample: shZc-UT_S15749
SAMN12100504 • SRS4999897 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted using Trizol whereafter nascent 4sU-labelled RNA was extracted as described in Austenaa et al. 2015 . Library preparation was performed using the TruSeq Stranded Total RNA sample preparation kit (Illumina RS-122-9007) starting from ca. 100-300 ng of nascent 4sU-labelled RNA, without ribosomal depletion.
Experiment attributes:
GEO Accession: GSM3900144
Links:
Runs: 1 run, 55.9M spots, 2.9G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR933286055,949,2122.9G1.8Gb2021-02-01

ID:
8153419

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...