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SRX5486259: GSM3657226: Day9_1001_1000_cells; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 84.3M spots, 10.6G bases, 4.8Gb downloads

Submitted by: NCBI (GEO)
Study: Single-cell RNA-seq of human cardiovascular progenitor cells generated with a chemically defined, xeno-free laminin based differentiation protocol
show Abstracthide Abstract
Regeneration of injured human heart muscle is limited and an unmet clinical need. There are no methods for the reproducible generation of clinical quality stem-cell-derived cardiovascular progenitors (CVPs). We identified laminin-221 (LN-221) as the most likely expressed cardiac laminin. We produced it as human recombinant protein, and showed that LN-221 promotes differentiation of pluripotent hESCs towards cardiomyocyte lineage and downregulates pluripotency and teratoma associated genes. We developed a chemically defined, xeno-free laminin-based differentiation protocol to generate CVPs. Single-cell RNA sequencing of CVPs derived from hESC lines supported reproducibility and identified three main progenitor subpopulations. These CVPs were transplanted into myocardial infarction mice, where heart function was measured by echocardiogram and human heart muscle bundle formation was identified histologically. This method may provide clinical quality cells for use in regenerative cardiology. Overall design: We generated four independent single-cell RNA-sequencing datasets with day 9 and 11 cardiovascular progenitor cells derived from HS1001 and H1 hES cells respectively. H1 and HS1001 cells were cultured for 9 and 11 days in wells coated with LN-521+221 from day 0. We used nutristem to maintain the cells. Differentiation commenced when cells reached confluency. Small molecule inhibitor CHIR99021 (inhibitor of GSK3) was added at day 4 followed by IWP2 (inhibitor of Wnt production) at day 7.
Sample: Day9_1001_1000_cells
SAMN11078380 • SRS4458843 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: A chromium instrument (10x Genomics) was used to partition viable cell suspensions into single cell droplets using Single Cell 3' library and gel bead kit version 2 (10x Genomics, Cat.#120237) as per manufacturer' protocol. Illumina Hi-Seq3000 sequencing platform in a single sequencing lane. The samples were loaded into single cell chip (10x Genomics, Cat.No.120236) to capture 1000 cells in each of the four sets of cells
Experiment attributes:
GEO Accession: GSM3657226
Links:
Runs: 1 run, 84.3M spots, 10.6G bases, 4.8Gb
Run# of Spots# of BasesSizePublished
SRR869040384,335,92310.6G4.8Gb2019-03-20

ID:
7408332

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