U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX5405791: GSM3617969: 6471: microbial genes; human metagenome; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 26.7M spots, 5.4G bases, 2.3Gb downloads

Submitted by: NCBI (GEO)
Study: Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [RNA-Seq]
show Abstracthide Abstract
Antibiotic resistance genes expressed in the upper respiratory tract of patients infected with influenza viruses were associated with the microbial community and microbial activities. Interactions between the host systemic responses to influenza infection and ARG expression highlight the importance of antibiotic resistance in viral-bacterial co-infection. Overall design: The microbial gene expression were profiled from the 35 respiratory samples taken from influenza infected individuals
Sample: 6471: microbial genes
SAMN10985074 • SRS4390587 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA was isolated from the human respiratory sample with the QIAGEN RNeasy Micro Kit Double-stranded cDNA was synthesized and amplified from 200-500 picograms of input RNA with the NuGEN Ovation RNA-seq V2 kit and purified using the QIAquick PCR Purification Kit. cDNA was sheared to 250 bp using the S220 Focused-ultrasonicator and purified using Agencourt RNAClean XP beads. Sequencing libraries were prepared from 100 ng of purified, sheared cDNA with the NuGen Ovation Ultralow System V2 1-16. The libraries were sequenced on the Illumina HiSeq 2500 instrument with TruSeq SBS V3 chemistry according to the manufacturer's instructions.
Experiment attributes:
GEO Accession: GSM3617969
Links:
Runs: 2 runs, 26.7M spots, 5.4G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR860634213,237,6172.7G1.2Gb2020-03-19
SRR860634313,475,8402.7G1.2Gb2020-03-19

ID:
7313491

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...