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SRX5332550: GSM3591159: NT12533_2; Escherichia coli; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 7M spots, 569.4M bases, 202.9Mb downloads

Submitted by: NCBI (GEO)
Study: Transcriptome profiling in an Escherichia coli strain collection
show Abstracthide Abstract
In order to understand the impact of genetic variants on transcription and ultimately in changes in observed phenotypes we have measured transcript levels in an Escherichia coli strains collection, for which genetic and phenotypic data has also been measured. Overall design: Each sample has been analysed at least in duplicate. All samples were harvested when cultures reached O.D. of about 0.2 (at 600 nanometers).
Sample: NT12533_2
SAMN10872152 • SRS4326892 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted using the RNeasy kit (QIAGEN) followed by Dnaze treatment Samples were subject ro rRNA depletion prior to library preparation
Experiment attributes:
GEO Accession: GSM3591159
Links:
Runs: 1 run, 7M spots, 569.4M bases, 202.9Mb
Run# of Spots# of BasesSizePublished
SRR85289647,029,098569.4M202.9Mb2022-03-03

ID:
7207703

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