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SRX533029: ChIP-Seq analysis of WCE in human anterior caudate cells
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 37.6M spots, 1.4G bases, 1.1Gb downloads

Design: Single read - Illumina
Submitted by: BI-phs000610
Study: RM Epigenomics Program - Broad_Alz_and_age-related
PRJNA193286 • SRP041672 • All experiments • All runs
show Abstracthide Abstract
Post-mortem brain samples were obtained from participants in the Rush Medical Center Religious Order Study; donors were selected who were classified as having no evidence of Alzheimer''s disease upon demise. Brain samples were dissected to sub-anatomical regions and preserved by rapid freezing. Tissues were subject to chromatin preparation for ChIP-Seq, to RNA isolation for RNASeq, and to DNA isolation and bisulfite conversion for whole genome shotgun bisulfite sequencing.
Sample: Non-tumor DNA sample from Brain of a human female participant in the dbGaP study "RM Epigenomics Program - Broad_Alz_and_Age-Related"
SAMN02075829 • SRS601906 • All experiments • All runs
Organism: Homo sapiens
Library:
Name: Lib:XZ:20100921:21--ChIP:XZ:20100914:21:anterior caudate :WCE
Instrument: Illumina Genome Analyzer IIx
Strategy: ChIP-Seq
Source: GENOMIC
Selection: RANDOM
Layout: SINGLE
Spot descriptor:
1  forward

Experiment attributes: (show all 7 attributes...) (hide...)
EXTRACTION_PROTOCOL_SONICATION_CYCLES: 1
CHIP_PROTOCOL_CHROMATIN_AMOUNT: standard
EXTRACTION_PROTOCOL: SDS lysis
EXPERIMENT_TYPE: ChIP-Seq Input
CHIP_PROTOCOL: Input
EXTRACTION_PROTOCOL_TYPE_OF_SONICATOR: Bioruptor
GEO Accession: GSM669978
Pipeline: show...hide...
NameStepPrev StepProgramVersion
BASE_CALLS1NILGAPipeline1.8.0
QUALITY_SCORES21GAPipeline1.8.0
Links:
External link:
External link:
The SRA run(s) below contain human sequence (more...)(less...)

These data are available through the dbGaP authorized access system. Request access to:

  • Study:  phs000610
  • Consent Group: AARC

Runs: 1 run, 37.6M spots, 1.4G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR127064337,550,7501.4G1.1Gb2014-07-24

ID:
733586

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