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SRX5089838: GSM3499455: controlgrna18hpf2; Ciona robusta; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 22.8M spots, 1.2G bases, 799.5Mb downloads

Submitted by: NCBI (GEO)
Study: Characterization of Wnt-Tcf functions during Ciona heart development
show Abstracthide Abstract
To assay Tcf functions during early cardiopharyngeal specification, bulk RNAseq were performed to profile the FACS-purified cardiopharyngeal lineage cells isolated from 15 and 18hpf Ciona larvae with CRISPR/Cas9-mediated Tcf mutagenesis. Overall design: Examination of CRISPR/Cas9-mediated Tcf mutagenesis in TVCs from two (15&18hpf) time points.
Sample: controlgrna18hpf2
SAMN10518266 • SRS4101651 • All experiments • All runs
Organism: Ciona robusta
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: 200 to 800 cells were directly sorted in 100µl lysis buffer included in RNAqueous®-Micro Total RNA Isolation Kit (Ambion). The total RNA extraction was performed following the manufacturer's instruction. 250-2000 pg of total RNA was loaded as template for cDNA synthesis using the SMART-Seq v4 Ultra Low Input RNA Kit (Clontech) with template switching technology. RNA-Seq Libraries were prepared and barcoded using Ovation® Ultralow System V2 1–16 (NuGen). Bulk RNAseq
Experiment attributes:
GEO Accession: GSM3499455
Links:
Runs: 1 run, 22.8M spots, 1.2G bases, 799.5Mb
Run# of Spots# of BasesSizePublished
SRR827474822,805,8681.2G799.5Mb2018-12-04

ID:
6866300

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