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SRX5075534: GSM3494876: YF_2; Ophiocordyceps sinensis; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 28.7M spots, 8.6G bases, 2.5Gb downloads

Submitted by: NCBI (GEO)
Study: Ophiocordyceps sinensis raw sequence reads
show Abstracthide Abstract
Chinese cordyceps is of particular interest for its confined distribution, mysterious lifecycle, ecological importance and developmental biology. The large scale artificial cultivation of this fungus has been succeeded in China until recently but with low efficiency and high cost being ascribed to too much unsolved biological issues, such as gene expression during development and the sexuality reproduction. The success of artificial cultivation provides the convenient for sampling during the different development stages. Overall design: Retinal mRNA profiles ofdifferent developmental stages of O. sinensis including hyphae (HY), sclerotium (ST), primordium (PR), young fruitbody (YF), developed fruitbody (FD) and mature fruit body (MF), were generated by deep sequencing, in triplicate, using Illumina Hiseq 2000.
Sample: YF_2
SAMN10495292 • SRS4089129 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Ten individuals were pooled as one replicate and three replicates were collected for each sample. After collection, these samples were immediately frozen in liquid nitrogen and stored at _80°C refrigerator until RNA extraction. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM3494876
Links:
Runs: 1 run, 28.7M spots, 8.6G bases, 2.5Gb
Run# of Spots# of BasesSizePublished
SRR825835028,686,6308.6G2.5Gb2019-10-31

ID:
6845419

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