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SRX5002785: GSM3467154: 1522-2; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 59.1M spots, 17.7G bases, 6.4Gb downloads

Submitted by: NCBI (GEO)
Study: The circular RNA profiling of 10 paired HCC and matched peritumor tissues
show Abstracthide Abstract
We collected primary HCC tumor and matched peritumor tissues from 10 HBV-related HCC patients to analyze the circRNA profile and its alteration in HCC through RNA-seq. A total of 92,204 circRNAs were identified in these 20 tissue samples with more than two unique back-spliced reads, of which 42 circRNAs were dysregulated in all HCC tumor tissue samples when compared with matched peritumor tissues (fold change=2 and p<0.05). As the detailed analysis of circRNA profiles in HCC, our study undoubtedly improved the comprehensiveness of HCC associated circRNA profiles. Overall design: Examination of 10 paired HCC and matched peritumor tissues
Sample: 1522-2
SAMN10415369 • SRS4037197 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA from HCC tumor and peritumor tissue samples were extracted using TransZol reagents. rRNAs were removed by a Ribo-Zero Magnetic kit, and linear RNA was digested by RNase R before construction of the RNA-seq libraries. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM3467154
Links:
Runs: 1 run, 59.1M spots, 17.7G bases, 6.4Gb
Run# of Spots# of BasesSizePublished
SRR818281859,062,84017.7G6.4Gb2021-11-14

ID:
6745339

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