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SRX4823277: GSM3425090: D14-400962; Schmidtea mediterranea; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 3.5M spots, 174.7M bases, 108.3Mb downloads

Submitted by: NCBI (GEO)
Study: RNA sequencing of single cells from the midline posterior extremity in planarian Schmidtea mediterranea
show Abstracthide Abstract
RNA sequencing of single cells from the midline posterior tip of the tail and posterior blastema in planarian Schmidtea mediterranea identified new posterior-pole enriched genes Overall design: RNA sequencing was performed on wnt1+ and wnt- single muscle cells (collagen+) from the midline tail tips in uninjured animals and the midline posterior blastemas in regenerating animals 72-hours after transverse amputation, and gene expression of posterior pole cells (wnt1+; collagen+) was compared with that of non-posterior pole muscle cells (wnt1-; collagen+) to identify genes differentially expressed in the posterior pole.
Sample: D14-400962
SAMN10227399 • SRS3897148 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Cells were lysed in total cell lysis buffer supplemented with 1% β-mercaptoethanol cDNA and sequencing libraries were constructed using SmartSeq2.
Experiment attributes:
GEO Accession: GSM3425090
Links:
Runs: 1 run, 3.5M spots, 174.7M bases, 108.3Mb
Run# of Spots# of BasesSizePublished
SRR79921393,493,737174.7M108.3Mb2019-05-27

ID:
6523356

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