Illumina paired RNA-Seq of human breast tumor sample S39 - SRA

SRX474659: Illumina paired RNA-Seq of human breast tumor sample S39
1 ILLUMINA (Illumina HiSeq 2000) run: 210.8M spots, 21.1G bases, 12.1Gb downloads

Design: Illumina TrueSeq paired-end sequencing of mRNA-seq libraries constructed from fresh-frozen samples. Autopsy breast tissue sample was flash frozen on dry ice. RNA was retrieved using Qiagen RNeasy mini kit. Illumina TruSeq RNA Sample Prep Kit (Cat#RS-122-2001) was used with 1 ug of total RNA for the construction of sequencing libraries. rRNA was removed using standard Illumina protocols.

Submitted by: University of North Carolina at Chapel Hill - Lineberger Comprehensive Cancer Center (UNC-LCCC)

Study: Sequence-based analysis of human breast tissues

PRJNA226742 • SRP038753 • All experiments • All runs

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The goal of this study is to study gene expression patterns in tumors, normal tissues, and cell lines.

Sample: Breast Neoplasms tumor RNA sample from Breast of a human participant in the dbGaP study "Sequence-Based Analysis of Human Breast Tumors"

SAMN02420011 • SRS560523 • All experiments • All runs

Organism: Homo sapiens

Library:

Name: A1-PRIMARYT

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Spot descriptor:

1 forward49 reverse

Pipeline: show...hide...

Program	Version
MapSplice	v12_07

The SRA run(s) below contain human sequence (more...)(less...)

These data are available through the dbGaP authorized access system. Request access to:

Study: phs000676
Consent Group: GRU-MDS

Runs: 1 run, 210.8M spots, 21.1G bases, 12.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR1176973	210,842,907	21.1G	12.1Gb	2014-09-08

ID:: 655149

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