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SRX4740957: GSM3401800: RNA pooled from 5 larvae fed on Gomphocarpus physocarpus replicate 2 [GP-2]; Danaus plexippus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 12.8M spots, 3.9G bases, 1.6Gb downloads

Submitted by: NCBI (GEO)
Study: Genome-wide miRNA and protein coding expression of Danaus plexippus fed on three different hosts.
show Abstracthide Abstract
Second instar larvae of the monarch butterfly, Danaus plexippus, from a nonmigratory population in Irapuato, Mexico, were reared for twenty-four hours on three species of milkweed hosts: Asclepias curassavica, A. linaria, and Gomphocarpus physocarpus. The greatest differences in coding gene expression occurred in genes controlling growth and detoxification and were most extreme in comparisons between G. physocarpus and the two Asclepias. MicroRNAs are predicted to be involved as regulators of many of these processes, in particular miR-278 could be an important regulator of growth through Hippo signaling. Overall design: 9 poly(A) and 9 sRNA libraries were prepared from Danaus pleixppus second instar larvae after feeding for 24 hours on three different hosts to identify genes potentially involved in host specificity.
Sample: RNA pooled from 5 larvae fed on Gomphocarpus physocarpus replicate 2 [GP-2]
SAMN10132230 • SRS3822286 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Larvae were collected after 24 hours, frozen immediately in liquid nitrogen and stored at -80C until the total RNA extractions were performed. Triplicates of five whole larvae for each treatment were homogenized using a Tissue Lyzer. Total RNA was extracted using the Direct-zol kit (Zymo), using the same total RNA to prepare mRNA and sRNA libraries. The mRNA libraries were created using TruSeq RNA kit. The small RNA libraries were created using the Illumina TruSeq small RNA kit.
Experiment attributes:
GEO Accession: GSM3401800
Links:
Runs: 1 run, 12.8M spots, 3.9G bases, 1.6Gb
Run# of Spots# of BasesSizePublished
SRR790451512,795,8783.9G1.6Gb2020-09-03

ID:
6424284

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