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SRX4734487: GSM3399842: P120 [discovery]; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 43.7M spots, 2.2G bases, 1.4Gb downloads

Submitted by: NCBI (GEO)
Study: A peripheral blood gene expression signature diagnoses subclinical acute rejection [discovery]
show Abstracthide Abstract
Histological features of acute rejection can be detected in surveillance biopsies despite stable graft function and can negatively impact graft outcomes. However, routine surveillance biopsies for detection of subclinical rejection are not generally performed due to potential risks and costs associated with repeated biopsies. Noninvasive biomarkers are required to facilitate early detection of acute rejection and borderline changes. We examined the impact of histological abnormalities at 3-month in surveillance biopsies on graft outcomes in kidney transplant recipients from the prospective Genomics of Chronic Allograft Rejection (GoCAR) study. We then performed RNA sequencing on whole blood collected at the time of biopsy in 88 patients (22 vs. 66) to identify transcripts associated with histological abnormalities. Subjects with subclinical ACR or borderline ACR at 3 month (ACR-3) had higher risk of subsequent clinical acute rejection at 12 and 24 month (P < 0.05), more rapid functional decline (P < 0.05) and a decreased graft survival in adjusted cox analysis (P < 0.01) than patients with no abnormalities on 3-month biopsy. We then identified a 17-gene signature in peripheral blood that accurately diagnosed ACR-3. Overall design: The transcriptomic profiles of discovery set (N=88) was used for identification of gene signatures associated with subclinical acute rejection.
Sample: P120 [discovery]
SAMN10118982 • SRS3816601 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted from pretransplant whole blood of kidney transplant recipients. The library was generated standard TruSeq mRNA library generation kit (Illumina Inc).
Experiment attributes:
GEO Accession: GSM3399842
Links:
Runs: 1 run, 43.7M spots, 2.2G bases, 1.4Gb
Run# of Spots# of BasesSizePublished
SRR789705943,663,4182.2G1.4Gb2019-09-12

ID:
6410798

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