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SRX4650657: GSM3378812: CXCR5+_Ifnar1ko_IL27_2; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 17.7M spots, 1.3G bases, 506.1Mb downloads

Submitted by: NCBI (GEO)
Study: The role of IFN-I and IL-27 in the expansion of virus-specific CD8+ T cell subtypes during persistent infection
show Abstracthide Abstract
Chronic infection and cancer are associated with suppressed T cell responses in the presence of activating antigen. Recent work identified memory-like CD8+ T cells termed follicular cytotoxic T cells (TFC) which sustain T cell responses during persistent infection and are essential for the T-cell proliferative burst following PD1 blockade. Approaches to expand these cells are sought. We show that blockade of interferon type 1 (IFN-I) receptor leads to TFC expansion in an IL-27-and STAT1-dependent manner. IFNAR1 blockade promoted accelerated cell division and retention of TCF1 in virus-specific CD8+ T cells. We found that CD8+ T cell-intrinsic IL-27 signaling safeguards the ability of TCF1-high cells to sustain proliferation and prevents premature cell cycle exit and programmed cell death. Transcriptome analysis revealed an IL-27-regulated gene module controlling survival of activated CD8+ T cells which is enhanced in IFNAR-attenuated conditions. We further demonstrated a cell-intrinsic requirement for the IL-27 target IRF1 in TFC expansion through promoting sustained division. These findings reveal that IL-27 opposes IFN-I to uncouple cell division from effector differentiation, and suggest IL-27 signaling could be exploited to augment self-renewing T cell populations in patients with chronic infections. Overall design: Cells were isolated from mouse spleens, sorted using flow cytometry and RNA isolated for sequencing. 3 replicates per biological group were used, each sample represents cells from an individual mouse.
Sample: CXCR5+_Ifnar1ko_IL27_2
SAMN09986476 • SRS3748651 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Mouse spleens were processed into splenocytes, enriched for mouse T cells using a magnetic negative selection (STEMCELL Technologies), stained and T cells were isolated by flow cytometry. RNA isolation from sorted cells was performed using the PicoPure RNA Isolation Kit (Thermo Fisher Scientific, Waltham, MA). RNA integrity was analyzed using Agilent RNA Nano Kit (Agilent, Santa Clara, CA). Amplified cDNA was prepared using SMART-Seq v4 Ultra Low Input RNA Kit (Clontech, Mountain View, CA), sheared using Covaris tubes (Covaris, Woburn, MA) and Illumina libraries constructed using the NEBNext Ultra DNA Library Prep Kit (NEB, Ipswich, MA) and sequenced using the NextSeq 500 system (Illumina, San Diego, CA) at a depth of 20-25 million single-end 75 bp reads per sample.
Experiment attributes:
GEO Accession: GSM3378812
Links:
Runs: 1 run, 17.7M spots, 1.3G bases, 506.1Mb
Run# of Spots# of BasesSizePublished
SRR779881617,742,5561.3G506.1Mb2019-04-01

ID:
6280962

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