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SRX4551581: GSM3332025: GAA-1; Mus musculus; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 9.9M spots, 236.7M bases, 116.7Mb downloads

Submitted by: NCBI (GEO)
Study: Guanidineacetic acid regulate myogenic differentiation through miR-133a-5 and miR-1a-3p co-mediated PI3K-Akt-mTOR signaling pathway
show Abstracthide Abstract
Through small RNA sequencing, we finded that a total of 8 miRNAs, including miR-133a-3p and miR-1a-3p cluster, showed differential expression after guanidineacetic acid supplement. To further study the function of miR-133a-3p and miR-1a-3p in guanidineacetic acid induce myotube hypertrophy, we transfected miR-133a-3p and miR-1a-3p mimics, that also induce myotube hypertrophy. Through bioinformatics and dual-luciferase reporter system, the target gene of miR-133a-3p and miR-1a-3p were respectively determined. Meanwhile, miR-133a-3p and miR-1a-3p modulate PI3K-Akt-mTOR signaling pathway by restraining target gene expression. Overall design: We used small RNA sequencing to detect miRNA transcriptomes of myotubes after 20 mM guanidineacetic acid treatment (GAA) or nagtive control(NC) (2 vs. 2).
Sample: GAA-1
SAMN09831644 • SRS3668679 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: The total RNA was harvested using Trizol-LS reagent. The integrity of total RNA was determined by theAgilent 2100 Bioanalyzer and RNA 6000 Nano LabChip Kit with suitable RNA samples having an RNA integrity number > 6.5. Approximately, 15 μg of small RNA-enriched total RNA was prepared for high-throughput sequencing. For each library, small RNA ranging from 15 to 35 nt was purified by 15% Tris-bora-EDTA polyacrylamide gel electrophoresis, and 3´ and 5´ adaptors were ligated with unique small RNA fractions. The modified small RNA was then reverse-transcribed and amplified by reverse transcription-PCR. Finally, the enriched cDNA was sequenced on a Illumina HiSeq 2500 according to the manufacturer's instructions.
Experiment attributes:
GEO Accession: GSM3332025
Links:
Runs: 1 run, 9.9M spots, 236.7M bases, 116.7Mb
Run# of Spots# of BasesSizePublished
SRR76920349,863,821236.7M116.7Mb2019-05-17

ID:
6159355

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