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SRX4154166: GSM3172471: MV411_sgNeg1_Rep2; Homo sapiens; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 23.2M spots, 1.8G bases, 606.7Mb downloads

Submitted by: NCBI (GEO)
Study: A transcription factor addiction imposed by an oncogene promoter sequence [RNA-seq]
show Abstracthide Abstract
Transcriptome analysis by high throughput sequencing Overall design: Gene expression profiles in AML with gene knockout
Sample: MV411_sgNeg1_Rep2
SAMN09294558 • SRS3367472 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was extracted using TRIzol following the manufacture's protocol RNA-seq library was prepared using Illumina TruSeq sample prep kit v2 according to the manufacture's protocol. Briefly, polyA RNA was selected and fragmented enzymatically. First strand of cDNA was synthesized using Super Script II reverse transcriptase, and then second strand was synthesized. Double-stranded cDNA was end-repaired, 3'-adenylated, ligated with indexed adaptor, and then PCR-amplified.
Experiment attributes:
GEO Accession: GSM3172471
Links:
Runs: 1 run, 23.2M spots, 1.8G bases, 606.7Mb
Run# of Spots# of BasesSizePublished
SRR724937623,167,8571.8G606.7Mb2018-10-26

ID:
5640434

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