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SRX4106206: GSM3147945: WT1_S7; Staphylococcus aureus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 75.9M spots, 5.8G bases, 2.1Gb downloads

Submitted by: NCBI (GEO)
Study: Changes in the transcriptome of S. aureus SH1000 containing a nisin resistance mutation in nsaS
show Abstracthide Abstract
We have demonstrated previously that high-level resistance to nisin can occur in Staphylococcus aureus as a consequence of a single non-synonymous mutation in nsaS, which encodes a putative sensor kinase. To explore the mechanism by which this mutation confers high-level resistance we compared global transcriptomes of SH1000 and SH1000 (NsaS A208E) using RNAseq. This process identified several genes to be upregulated in SH1000 (NsaS A208E), including members of the NsaRS regulon which encode VraDE and BraDE, two putative ABC-transporters and are known to provide intrinsic nisin resistance. Gene deletion and complementation experiments revealed that both BraDE and VraDE are essential to high-level nisin resistance, with BraDE required for signal transduction through NsaRS, and VraDE directly responsible for nisin detoxification. Overall design: Total RNA was extracted from explonentially-growing cultures of SH1000 (x2 replicates) and SH1000 (NsaS A208E) (x3 replicates) and was subjected to sequencing using an Illumina NextSeq 500
Sample: WT1_S7
SAMN09231668 • SRS3321999 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNAprotect (Qiagen) was added to cultures of each organism at 2x culture volume to stabilise RNA. Total RNA was extracted using the RNAeasy midi kit (Qiagen) according to manufacturer's instructions, with the exception that cells were first treated with lysostaphin (200 ug/ml) and proteinase K (40 ug/ml) for 90 and 10 minutes, respectively. Illumina TruSeq RNA Sample Prep Kit v2 was used for library creation with 1 ug of total RNA RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM3147945
Links:
Runs: 1 run, 75.9M spots, 5.8G bases, 2.1Gb
Run# of Spots# of BasesSizePublished
SRR718948275,937,7005.8G2.1Gb2018-11-19

ID:
5591767

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