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SRX4003763: GSM3119074: Input in WT1; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 24.3M spots, 1.2G bases, 427.2Mb downloads

Submitted by: NCBI (GEO)
Study: Genome-wide estrogen-related receptor gamma (ERRg) occupancy in human iPS cell-derived cardiomyocytes (hiPSC-CMs)
show Abstracthide Abstract
Estrogen-related receptor gamma (ERRg) has been shown to control gene expression involved in a broad range of mitochondrial energy metabolism including oxidative phosphorylation, TCA cycle, and fatty acid oxidation. However, ERRg direct targets were not identified in cardiomyocytes. With ERRg ChIP-seq, we found ERRg peaks on the promoter regions of mitochondrial energy metabolic genes as expected. Besides, ERRg extensively distributed the promoter regions of cardiac contractile, ion channels and Ca2+ handling protein genes. Surprisingly, the peaks also were found on non-cardiomyocyte genes and genes expressed in early-stage cardiomyocytes. Overall design: With ChIP-seq, examination of ERRg occupancy on the human genome in wild type hiPSC-CMs and ERRg KO hiPSC-CMs.
Sample: Input in WT1
SAMN08993910 • SRS3225504 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: Lysates were clarified from sonicated nuclei and ERRg-DNA complexes were isolated with the antibody. Libraries were prepared according to NuGen The Ovation® Ultralow Library System V2 (Part# 0801-0303) with 2 mg DNA sample.
Experiment attributes:
GEO Accession: GSM3119074
Links:
Runs: 1 run, 24.3M spots, 1.2G bases, 427.2Mb
Run# of Spots# of BasesSizePublished
SRR707331524,264,2161.2G427.2Mb2020-06-10

ID:
5475384

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