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SRX3989061: GSM3109017: Wt_Cu_R1; Zygosaccharomyces bailii; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 7.5M spots, 374.1M bases, 186Mb downloads

Submitted by: NCBI (GEO)
Study: Transcriptional profiling of Zygosaccharomyces bailii early response to acetic acid or copper stresses mediated by ZbHaa1
show Abstracthide Abstract
The non-conventional yeast species Zygosaccharomyces bailii is remarkably tolerant to acetic acid, a highly important microbial inhibitory compound in Food Industry and Biotechnology. ZbHaa1 is the functional homologue of S. cerevisiae Haa1 and a bifunctional transcription factor able to modulate Z. bailii adaptive response to both acetic acid and copper stresses. RNA-Seq was used to investigate genomic transcription changes in Z. bailii during early response to sublethal concentrations of acetic acid (140 mM, pH 4.0) or copper (0.08 mM), and uncover the regulatory network activated by these stresses under ZbHaa1 control. Overall design: mRNA profiling of Z. bailii IST302 parental strain (Wt) and derived deletion mutant Zbhaa1? (Mut) unstressed cells or exposed to either acetic acid (AA) or copper (Cu) stresses. A total of 18 samples were analysed (3 replicates per condition)
Sample: Wt_Cu_R1
SAMN08971742 • SRS3213574 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA extraction was performed by using a modified hot phenol method, described in Amin-ul Mannan et., Analytical Biochemistry, 2009. Libraries were prepared using the QuantSeq 3' mRNA-Seq Library Prep Kit FWD for Illumina.
Experiment attributes:
GEO Accession: GSM3109017
Links:
Runs: 1 run, 7.5M spots, 374.1M bases, 186Mb
Run# of Spots# of BasesSizePublished
SRR70580787,481,151374.1M186Mb2018-12-26

ID:
5457024

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