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SRX3944402: GSM3100449: IRE1 KO NK at day 7 replicate 2; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 28.1M spots, 5.7G bases, 2.4Gb downloads

Submitted by: NCBI (GEO)
Study: The IRE1-XBP1 pathway promotes natural killer cell responses against viral infection and cancer by regulation of c-Myc
show Abstracthide Abstract
Natural killer (NK) cells are critical mediators of host immunity against infectious disease and cancer. The intrinsic regulators of NK cells are not fully understood. Here, we demonstrate that the ER stress sensor inositol-requiring enzyme 1 (IRE1a) and its substrate transcription factor X-box-binding protein 1 (XBP1) critically drive NK cell-mediated responses against viral infection and tumors. IRE1a and XBP1 were essential for the robust expansion of activated mouse and human NK cells. Transcriptome analysis revealed the transcription factor c-Myc as a novel and direct target of XBP1 for downstream regulation of NK cell proliferation. Genetic ablation or pharmaceutical blockade of IRE1a downregulated c-Myc, whereas overexpression of XBP1 resulted in c-Myc hyperactivation. NK cells lacking c-Myc demonstrated a functional deficit comparable to IRE1a or XBP1 deficiency. Overall, our study identifies a novel IRE1-XBP1-cMyc axis in NK cell immunity, providing new insight into the host immune response against infection and cancer. Overall design: Transcriptome analysis of activated and quiescent NK cells (WT and IRE1 KO)
Sample: IRE1 KO NK at day 7 replicate 2
SAMN08939475 • SRS3174938 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Total RNA from sorting-purified Ly49H+ WT or IRE1NK NK cells was extracted with the RNeasy RNA purification micro kit (Qiagen) according to the manufacturer's instructions. poly(A)+ RNA-seq libraries (pair-end 75) were prepared with an Illumina TruSeq RNA Sample Preparation Kit V2 according to the manufacturer's instructions (Illumina).
Experiment attributes:
GEO Accession: GSM3100449
Links:
Runs: 1 run, 28.1M spots, 5.7G bases, 2.4Gb
Run# of Spots# of BasesSizePublished
SRR701193828,086,2545.7G2.4Gb2019-04-01

ID:
5407558

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