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SRX3933814: GSM3097743: SI-10 (A_1); Sus scrofa; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 13.9M spots, 696.5M bases, 318Mb downloads

Submitted by: NCBI (GEO)
Study: Comparison of microRNA expression profiling in pig spleens among three time points after infection by Chinese I genotype strain of Toxoplasma gondii
show Abstracthide Abstract
The objectives of the present study were to analyze the changes on miRNA expression profile in swine spleen using next-generation sequencing (NGS) technology and bioinformatic analysis at 10, 25 and 50 days post inoculation (DPI) with Chinese I genotype strain of T. gondii. Compared to control group, 34, 6 and 86 differentially expressed miRNAs (DEMs) were respectively found in spleens of infected pigs at 10, 25 and 50 DPI. The results not only showed that the miRNA expression of the host can be changed by the invasion of T. gondii, but also revealed the differences on the regulation of the key biological processes or pathways involved in host responses between the acute and chronic T. gondii infection. Overall design: Differential expression of porcine microRNAs at three time points after infection with Chinese I genotype strain of Toxoplasma gondii were analyzed by deep sequencing
Sample: SI-10 (A_1)
SAMN08930036 • SRS3166662 • All experiments • All runs
Organism: Sus scrofa
Library:
Instrument: Illumina HiSeq 2500
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Spleens were removed, flash frozen on dry ice, and RNA was harvested using Trizol reagent. Three individuals' RNA samples, of the same group at each time point were equally mixed to generate an RNA pool. A total amount of 3 μg total RNA per pool was used as input material for the small RNA library. Sequencing libraries were generated using NEBNext® Multiplex Small RNA Library Prep Set for Illumina® (NEB, USA.).
Experiment attributes:
GEO Accession: GSM3097743
Links:
Runs: 1 run, 13.9M spots, 696.5M bases, 318Mb
Run# of Spots# of BasesSizePublished
SRR700099413,929,425696.5M318Mb2019-01-01

ID:
5395624

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