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SRX3811425: GSM3052842: WT_scRNA_batch4; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 112.3M spots, 33.7G bases, 15.4Gb downloads

Submitted by: NCBI (GEO)
Study: Med23 serves as a gatekeeper of the myeloid potential of hematopoietic stem cells
show Abstracthide Abstract
In response to myeloablative stresses, HSCs are rapidly activated to replenish myeloid progenitors, while maintaining full potential of self-renewal to ensure life-long hematopoiesis. However, the key factors that orchestrate HSC activities during physiological stresses remain largely unknown. Here we report that Med23 controls the myeloid potential of activated HSCs. Ablation of Med23 in hematopoietic system leads to lymphocytopenia. Med23- deficient HSCs undergo myeloid-biased differentiation and lose the self-renewal capacity. Interestingly, Med23-deficient HSCs are much easier to be activated in response to physio- logical stresses. Mechanistically, Med23 plays essential roles in maintaining stemness genes expression and suppressing myeloid lineage genes expression. Med23 is downregulated in HSCs and Med23 deletion results in better survival under myeloablative stress. Altogether, our findings identify Med23 as a gatekeeper of myeloid potential of HSCs, thus providing unique insights into the relationship among Med23-mediated transcriptional regulations, the myeloid potential of HSCs and HSC activation upon stresses. Overall design: Hematopoietic stem cells in the bone marrow were isolated from WT or Med23-dificient adult mice, and were subjected to scRNA-seq.
Sample: WT_scRNA_batch4
SAMN08734431 • SRS3061938 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Bone marrow HSCs from WT or Med23-dificient adult mice were isolated by cell sorting (LSKsCD150+CD34-CD48-). Single mouse hematopoietic stem cells which were isolated by cell sorting, were manually picked, lysed and subjected to first-strand cDNA synthesis by using barcoded oligo-dT primers. Then, second-strand cDNA were synthesized, amplified and fragmented by sonication (Covaris). Final RNA-seq library was prepared by using the KAPA Hyper Prep Kit (KAPA Biosystems).
Experiment attributes:
GEO Accession: GSM3052842
Links:
Runs: 1 run, 112.3M spots, 33.7G bases, 15.4Gb
Run# of Spots# of BasesSizePublished
SRR6856312112,311,37133.7G15.4Gb2018-07-15

ID:
5248759

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