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SRX375798: GSM1262172: 9wk: 55 [RRBS]; Mus musculus; Bisulfite-Seq
3 ILLUMINA (Illumina HiSeq 2000) runs: 20.7M spots, 1G bases, 720.3Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Maternal Nutrition Induces Pervasive Gene Expression Changes but no Detectable DNA Methylation Differences in the Liver of Adult Offspring [RRBS]
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Aims: Epidemiological and animal studies have shown that maternal diet can influence metabolism in adult offspring. However, the molecular mechanisms underlying these changes remain poorly understood. Here, we aim to explore phenotypes induced by maternal obesity in a mouse model and examine gene expression and epigenetic alterations in adulthood induced by maternal diet. Methods: We analyzed genetically identical male mice born from dams fed a high- or low-fat diet throughout pregnancy and until day 21 postpartum. After weaning, half of the males of each group were fed a high-fat diet, the other half a low-fat diet. We first characterized the genome-wide gene expression patterns of six tissues of adult offspring - liver, pancreas, white adipose, brain, muscle and heart [GSE40903] . We then measured DNA methylation patterns in liver at selected loci and throughout the genome. Results: Maternal diet had a significant effect on the body weight of the offspring when they are fed an obesogenic diet after weaning. Our analyses showed that maternal diet had a pervasive effect on gene expression, with a pronounced effect in liver where it affected many genes involved in inflammation, cholesterol synthesis and RXR activation. Maternal diet had no detectable effect on DNA methylation in the liver. Conclusions: Overall, our findings highlighted the persistent influence of maternal diet on adult tissue regulation and suggested that the transcriptional changes were unlikely to be caused by DNA methylation differences in adult liver. Overall design: Methylation is compared between nine week old animals fed a common diet as adults, but derived from mothers fed different diets.
Sample: 9wk: 55 [RRBS]
SAMN02401273 • SRS501475 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2000
Strategy: Bisulfite-Seq
Source: GENOMIC
Selection: Reduced Representation
Layout: SINGLE
Construction protocol: We extracted DNA from the liver of all 9-week-old males using the DNeasy Blood and Tissue kit (Qiagen Inc., Valencia, CA, USA). Briefly, we digested genomic DNA with MspI before preparing barcoded libraries according to the Illumina protocol. We then size selected DNA molecules of 150-600 bp and bisulfite converted the DNA libraries.
Experiment attributes:
GEO Accession: GSM1262172
Links:
External link:
Runs: 3 runs, 20.7M spots, 1G bases, 720.3Mb
Run# of Spots# of BasesSizePublished
SRR10283907,572,582378.6M256.3Mb2014-03-05
SRR10283916,566,278328.3M231.7Mb2014-03-05
SRR10283926,591,588329.6M232.3Mb2014-03-05

ID:
537694

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