GSM3020725: PGAB1; Acinetobacter baumannii; Porphyromonas gingivalis;... - SRA

SRX3737100: GSM3020725: PGAB1; Acinetobacter baumannii; Porphyromonas gingivalis; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 13.9M spots, 724.3M bases, 511.6Mb downloads

Submitted by: NCBI (GEO)

Study: Transcriptional analysis of P. gingivalis and A. baumannii

PRJNA435672 • SRP133352 • All experiments • All runs

show Abstracthide Abstract

We examine the transcriptome of both P. gingivalis and A. baumannii in monotypic communities compared to heterotypic communities with both organisms. We identify a number of genes responsible for enhanced biofilm development as well as metabolic synergy. Overall design: RNA-seq of mono-typic or hetero-typic communities following 3 hours of anaerobic incubation in PBS. The overall experiment was completed as two independent experiments comparing Pg to PgAb and a second experiment analyzing Ab to AbPg

Sample: PGAB1

SAMN08583773 • SRS2993961 • All experiments • All runs

Organism: Acinetobacter baumannii

Library:

Instrument: Illumina HiSeq 2500

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: Total RNA was isolated using the Qiagen RNAeasy kit according to manufacturers protocol RNA libraries were prepared according to manufacturers protocols using the Ilumina Ribo-zero kit for rRNA depletion and the TruSeq kits

Experiment attributes:

GEO Accession: GSM3020725

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 13.9M spots, 724.3M bases, 511.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR6765895	13,929,276	724.3M	511.6Mb	2018-12-27

ID:: 5153722

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