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SRX3699660: GSM3004212: D4Gof_WT4; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 17.5M spots, 873.2M bases, 271.3Mb downloads

Submitted by: NCBI (GEO)
Study: Coronary arterial development is regulated by a Dll4-Jag1-EphrinB2 signaling cascade
show Abstracthide Abstract
Coronaries are essential for myocardial growth and heart function. Notch is crucial for mouse embryonic angiogenesis, but its role in coronary development remains uncertain. We show Jag1, Dll4 and activated Notch1 receptor expression in sinus venosus (SV) endocardium. Endocardial Jag1 removal blocks SV capillary sprouting, while Dll4 inactivation stimulates excessive capillary growth, suggesting that ligand antagonism regulates coronary primary plexus formation. Later endothelial ligand removal, or forced expression of Dll4 or the glycosyltransferase MFng, blocks coronary plexus remodeling, arterial differentiation, and perivascular cell maturation. Endocardial deletion of Efnb2 phenocopies the coronary arterial defects of Notch mutants. Angiogenic rescue experiments in ventricular explants, or in primary human endothelial cells, indicate that EphrinB2 is a critical effector of antagonistic Dll4 and Jag1 functions in arterial morphogenesis. Thus, coronary arterial precursors are specified in the SV prior to primary coronary plexus formation and subsequent arterial differentiation depends on a Dll4-Jag1-EphrinB2 signaling cascade. Overall design: RNA was isolated at E12.5, from whole hearts, for WT (4 replicate samples, pooling 4 embryos) and Jag1flox;Nfatc1-Cre embryos(4 replicate samples, pooling 4 embryos), and for WT (4 replicate samples, pooling 4 embryos) and Dll4flox;Nfatc1-Cre (4 replicate samples, pooling 4 embryos). It was isolated at E15.5, from heart ventricles, for WT (4 replicate samples, pooling 3 embryos) and Dll4flox; Cdh5(PAC)-CreERT (3 replicate samples, pooling 3 embryos) and for WT (4 replicate samples, pooling 3 embryos) and Dll4GOF;Tie2-Cre (3 replicate samples, pooling 3 embryos). Finally, it was isolated at E16.5, from heart ventricles, for WT (4 replicate samples, from one embryo) and Efnb2flox;Nfatc1-Cre (4 replicate samples, from one embryo).
Sample: D4Gof_WT4
SAMN08536507 • SRS2959133 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA from whole hearts, collected at E12.5 from WT and Jag1Flox;Nfatc1-Cre and from WT and Delta4Flox;Nfatc1-Cre embryos, was isolated with the Arcturus Picopure RNA isolation kit (Applied Biosystems). RNA from ventricles, collected at E15.5 from WT and D4Cdh5-CreER, from WT and Delta4GOF;Tie2-Cre and from E16.6 WT and Efnb2Flox;Nfatc1-Cre embryos was isolated with RNA Isolation Kit: RNeasy. Libraries were prepared using the NEBNext Ultra RNA Library preparation kit (New England Biolabs)
Experiment attributes:
GEO Accession: GSM3004212
Links:
Runs: 1 run, 17.5M spots, 873.2M bases, 271.3Mb
Run# of Spots# of BasesSizePublished
SRR672664517,463,224873.2M271.3Mb2019-12-03

ID:
5107018

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