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SRX3699516: GSM3004128: hESCs rep2; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 29.5M spots, 2.9G bases, 1.3Gb downloads

Submitted by: NCBI (GEO)
Study: RNA sequencing analysis of human embryonic stem cells and axial progenitors
show Abstracthide Abstract
We analysed the transcriptomes of human embryonic stem cells (hESCs) and in vitro derived axial progenitors. Overall design: RNA sequencing of triplicate samples of undifferentiated hESCs grown in Essential 8 medium and Geltrex and axial progenitors generated after a 3 day culture of hPSCs on fibronectin in the presence of bFGF (20 ng/ml) and the WNT agonist/GSK3 inhibitor CHIR99021
Sample: hESCs rep2
SAMN08536310 • SRS2958992 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA was harvested using the RNeasy kit (Qiagen) according to the manufacturer's instructions and digested with DNase I (Qiagen) to remove genomic DNA. Total RNA was processed according to the TruSeq protocol (Illumina). Three separate RNA libraries (biological replicates) were barcoded and prepared for hESCs and D3 axial progenitors. Library size, purity and concentration were determined using the Agilent Technologies 2100 Bioanalyzer. For sequencing, four samples were loaded per lane on an Illumina Genome Analyzer Hiseq2500.
Experiment attributes:
GEO Accession: GSM3004128
Links:
Runs: 1 run, 29.5M spots, 2.9G bases, 1.3Gb
Run# of Spots# of BasesSizePublished
SRR672650129,479,7422.9G1.3Gb2018-08-14

ID:
5106874

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