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SRX355597: GSM1234959: Heart, Resected, rep4; Danio rerio; RNA-Seq
1 ILLUMINA (Illumina Genome Analyzer II) run: 18M spots, 703.5M bases, 360.3Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Comparative transcriptome profiling of the injured zebrafish and mouse hearts identifies miRNA-dependent repair pathways
show Abstracthide Abstract
The mammalian heart has poor regenerative capacity following injury. In contrast, certain lower vertebrates such as zebrafish retain a robust capacity for regeneration into adult life. Here we use an integrated approach to identify evolutionary conserved regenerative miRNA-dependant regulatory circuits in the heart. We identified novel miRNA-dependant networks involved in critical biological pathways, which are differentially utilized between the infarcted mouse heart and the regenerating zebrafish heart. Overall design: 2 conditions, 4 biological replicates per condition
Sample: Heart, Resected, rep4
SAMN02359211 • SRS483792 • All experiments • All runs
Organism: Danio rerio
Library:
Instrument: Illumina Genome Analyzer II
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Total RNA was isolated using Trizol (Invitrogen). RNA quantities and quality were assessed using a NanoDrop ND-1000 spectrophotometer or an Agilent 2100 BioanalyzerRNA quantities and quality were assessed using a NanoDrop ND-1000 spectrophotometer or an Agilent 2100 Bioanalyzer. Libraries of small RNAs for sequencing were prepared using the DGE-Small RNA Sample Kit, Alternative v1.5 Protocol (Illumina; San Diego, California) according to the protocol supplied with the reagents (Protocol Rev. A, published February 2009) and using 1ug of total RNA. One lane of each library was sequenced on the Genome Analyzer IIx (Illumina) using the 36 Cycle Sequencing Kit v5 and v4 flowcell and cluster reagents (Catalog FC-104-5020 and GD-300-1001)
Experiment attributes:
GEO Accession: GSM1234959
Links:
External link:
Runs: 1 run, 18M spots, 703.5M bases, 360.3Mb
Run# of Spots# of BasesSizePublished
SRR99733118,038,963703.5M360.3Mb2016-02-18

ID:
503824

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