GSM1228802: pse_5; Drosophila pseudoobscura; RNA-Seq - SRA

SRX348450: GSM1228802: pse_5; Drosophila pseudoobscura; RNA-Seq
1 ILLUMINA (Illumina Genome Analyzer II) run: 11.2M spots, 560.7M bases, 342.8Mb downloads

Submitted by: Gene Expression Omnibus (GEO)

Study: Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression (part 1)

PRJNA218868 • SRP029884 • All experiments • All runs

show Abstracthide Abstract

We sequenced mRNA from blastoderm embryos of Drosophila melanogaster, Drosophila yakuba, Drosophila pseudoobscura and Drosophila virilis. Two samples contain pooled mRNA from several species, and the remaining 24 samples contain mRNA from a single species. Methods: Retinal mRNA profiles of Blastoderm embryos Overall design: Comparison of the evolution of gene expression and regulatory TF binding in early Drosophila embryos.

Sample: pse_5

SAMN02353794 • SRS479226 • All experiments • All runs

Organism: Drosophila pseudoobscura

Library:

Instrument: Illumina Genome Analyzer II

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: total RNA was extracted using Trizol, according to manufacturer's instructions RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM1228802

Links:

External link: GEO Sample GSM1228802

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 11.2M spots, 560.7M bases, 342.8Mb

Run	# of Spots	# of Bases	Size	Published
SRR976133	11,214,380	560.7M	342.8Mb	2013-09-13

ID:: 494860

SRA

Sequence Read Archive

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