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SRX3368168: GSM2843668: Attached-iSPIB rep1; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 29.2M spots, 8.8G bases, 3.6Gb downloads

Submitted by: NCBI (GEO)
Study: SPIB promotes anoikis resistance via elevated autolysosomal process in lung cancer cells [RNA-seq]
show Abstracthide Abstract
Anoikis (detachment-induced cell death) is a specific type of programmed cell death which occurs in response to the loss of the correct extracellular matrix connections. Anoikis resistance is an important mechanism in cancer invasiveness and metastatic behavior. Autophagy, on the other hand, involves the degradation of damaged organelles and the recycling of misfolded proteins and intracellular components. However, the intersection of these two cellular responses in lung cancer cells has not been extensively studied. Here, we identified that upon matrix deprivation, the lymphocyte lineage-specific Ets transcription factor SPIB was activated and directly enhanced SNAP47 transcription in certain lung cancer cells. Loss of attachment-induced autophagy significantly increased anoikis resistance by SPIB activation. Consistent with this function, SPIB depletion by short hairpin RNA abrogated SNAP47 transcriptional activation upon matrix deprivation. Therefore, these data delineate an important role of SPIB in autophagy-mediated anoikis resistance in lung cancer cells. Accordingly, these findings suggest that manipulating SPIB-regulated pathways in vivo and evaluating the impact of anoikis resistance warrant further investigation. Overall design: mRNA profiles of attached H1703 control,attached H1703 SPIB-KD,ECM detached H1703 control,ECM detached H1703 SPIB-KD. There are two biological repeats in each group.
Sample: Attached-iSPIB rep1
SAMN07982498 • SRS2665777 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were collected, flash frozen on dry ice, and RNA was harvested using Trizol reagent. Thermo RevertAid First Strand cDNA Synthesis Kit (Cat#K1622) was used with 1 ug of total mRNA for the construction of sequencing libraries. mRNA libraries were prepared for sequencing using standard Thermo protocols
Experiment attributes:
GEO Accession: GSM2843668
Links:
Runs: 1 run, 29.2M spots, 8.8G bases, 3.6Gb
Run# of Spots# of BasesSizePublished
SRR626192229,241,1618.8G3.6Gb2017-11-15

ID:
4702610

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