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SRX3353699: GSM2837973: RNA_TH2_2hr_BR2_TR1; Mus musculus; RNA-Seq
2 ILLUMINA (Illumina HiSeq 2500) runs: 38M spots, 2.8G bases, 1.8Gb downloads

Submitted by: NCBI (GEO)
Study: The transcription factor c-Maf is a positive regulator of IL-10 with context-specific roles in CD4+ T cell effector function and in vivo consequences [RNA-seq in vitro]
show Abstracthide Abstract
CD4+ T cells differentiate into distinct subsets which produce unique patterns of cytokines to eradicate pathogens, alongside IL-10 which controls immune pathology. How Il10 expression is regulated alongside the subset-specific cytokines is unclear. Using transcriptional and epigenomic profiling of CD4+ T cells from TH1 (malaria), TH2 (allergy) and TH17 (autoimmunity) disease models, we show here that c-Maf, identified as the top candidate regulator of IL-10, directly induces IL-10 across all CD4+ T cell subsets, controlling pathology in TH1 and TH2-type responses. We also report direct negative effects of c-Maf on Il2 explaining the increased Foxp3+Tregs, and direct positive effects on Rorc, as mechanisms for the decreased pathology seen in the TH17 disease model in the absence of c-Maf. Thus, c-Maf has broad yet context specific roles in directly and indirectly regulating gene expression, allowing each type of T effector immune response to occur effectively yet in a controlled fashion. Overall design: RNA-Seq analysis, in 2-3 biological replicates, of in vitro differentiated CD4+ Th cells and ex vivo Treg cells
Sample: RNA_TH2_2hr_BR2_TR1
SAMN07967587 • SRS2652885 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Extraction of total RNA was carried out using the RNeasy Mini Kit (Qiagen) according to manufacturer's instructions. Libraries were prepared with TruSeq RNA Sample Preparation Kit V2 (Illumina) according to the manufacturer's instructions.
Experiment attributes:
GEO Accession: GSM2837973
Links:
Runs: 2 runs, 38M spots, 2.8G bases, 1.8Gb
Run# of Spots# of BasesSizePublished
SRR624671018,364,6081.4G889.7Mb2018-02-08
SRR624671119,602,0881.5G915.6Mb2018-02-08

ID:
4686637

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