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SRX3324197: GSM2830339: STAT4WT_HNEG_D2_001; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 40.4M spots, 4G bases, 2Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptional regulation of adaptive NK and CD8 T cell responses [RNA-Seq]
show Abstracthide Abstract
Natural killer (NK) cells are innate lymphocytes that possess features of adaptive immunity such as clonal expansion and generation of long-lived memory. Here we look at transcriptional profiles of NK cells throughout several time points during MCMV infection, ex-vivo cytokine stimulation, and/or deficiency of key transcription factors such as STAT4, STAT1, and Runx1. In addition, we profile parallel time points of MCMV-specific CD8 T cells during infection and memory formation. Overall design: RNA-seq was performed on ex-vivo NK cultured overnight in cytokines or NK cells and CD8 T cells harvested during in-vivo infection. Cytokine conditions are as follows: unstim, IL-12 (20 ng/ml), IL-12 (20 ng/ml) and IL-18 (10 ng/ml), IFNa (100 U/ml) stim, IL-15 (10 ng/ml).
Sample: STAT4WT_HNEG_D2_001
SAMN07833735 • SRS2628306 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cells were sorted directly into Trizol and total RNA underwent amplification using SMART-seq V4 (Clontech) Ultra Low Input RNA kit. Subsequently, 10 ng of amplified cDNA was used to prepare Illumina hiseq libraries with the Kapa DNA library preparation chemistry (Kapa Biosystems) using 8 cycles of PCR. Samples were barcoded and run on Hiseq 2500 1T, in a 50bp/50bp Paired end run, using the TruSeq SBS Kit v3 (Illumina). An average of 47 million paired reads were generated per sample and the percent of mRNA bases was over to 72% on average.
Experiment attributes:
GEO Accession: GSM2830339
Links:
Runs: 1 run, 40.4M spots, 4G bases, 2Gb
Run# of Spots# of BasesSizePublished
SRR621552640,389,8694G2Gb2017-12-21

ID:
4652934

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