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SRX3213586: GSM2792674: NMR_Bis_PCR_10; Heterocephalus glaber; OTHER
8 ILLUMINA (NextSeq 500) runs: 578,782 spots, 87.3M bases, 41.1Mb downloads

Submitted by: NCBI (GEO)
Study: The rate of ageing-associated DNA methylation dynamics is a molecular readout of lifespan variation amongst mammalian species [Bis-PCR: naked mole-rat]
show Abstracthide Abstract
We used liver samples from Naked Mole Rat to determine rate of change of methylation with respect to age. Overall design: Bis-PCR profiling of Naked Mole Rats of various age.
Sample: NMR_Bis_PCR_10
SAMN07693498 • SRS2538342 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: SINGLE
Construction protocol: Targeted bisulfite PCR-based analysis was performed using the 48.48 layout on the Fluidigm C1 system (Fluidigm, USA), coupled with Illumina NextSeq sequencing. Bisulfite PCR primers were designed using Primer3 (PMID:17485472), DNA was bisfulite converted (EpiTect, Qiagen) prior to amplification. Amplicons from a single sample were pooled and individually indexed to create a multiplex library prior to sequencing on an Illumina NextSeq instrument.
Experiment attributes:
GEO Accession: GSM2792674
Links:
Runs: 8 runs, 578,782 spots, 87.3M bases, 41.1Mb
Run# of Spots# of BasesSizePublished
SRR607191876,81511.6M5.4Mb2018-01-23
SRR607191975,95511.5M5.4Mb2018-01-23
SRR607192069,96510.6M5Mb2018-01-23
SRR607192169,77710.5M5Mb2018-01-23
SRR607192274,43911.2M5.2Mb2018-01-23
SRR607192373,96511.2M5.2Mb2018-01-23
SRR607192469,54510.5M5Mb2018-01-23
SRR607192568,32110.3M4.9Mb2018-01-23

ID:
4522405

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