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SRX3213583: GSM2792671: NMR_Bis_PCR_7; Heterocephalus glaber; OTHER
8 ILLUMINA (NextSeq 500) runs: 637,072 spots, 96.1M bases, 45Mb downloads

Submitted by: NCBI (GEO)
Study: The rate of ageing-associated DNA methylation dynamics is a molecular readout of lifespan variation amongst mammalian species [Bis-PCR: naked mole-rat]
show Abstracthide Abstract
We used liver samples from Naked Mole Rat to determine rate of change of methylation with respect to age. Overall design: Bis-PCR profiling of Naked Mole Rats of various age.
Sample: NMR_Bis_PCR_7
SAMN07693501 • SRS2538339 • All experiments • All runs
Library:
Instrument: NextSeq 500
Strategy: OTHER
Source: GENOMIC
Selection: other
Layout: SINGLE
Construction protocol: Targeted bisulfite PCR-based analysis was performed using the 48.48 layout on the Fluidigm C1 system (Fluidigm, USA), coupled with Illumina NextSeq sequencing. Bisulfite PCR primers were designed using Primer3 (PMID:17485472), DNA was bisfulite converted (EpiTect, Qiagen) prior to amplification. Amplicons from a single sample were pooled and individually indexed to create a multiplex library prior to sequencing on an Illumina NextSeq instrument.
Experiment attributes:
GEO Accession: GSM2792671
Links:
Runs: 8 runs, 637,072 spots, 96.1M bases, 45Mb
Run# of Spots# of BasesSizePublished
SRR607188387,89413.3M6.1Mb2018-01-23
SRR607188485,74712.9M6Mb2018-01-23
SRR607188580,38012.1M5.7Mb2018-01-23
SRR607188679,59212M5.7Mb2018-01-23
SRR607188779,80512M5.6Mb2018-01-23
SRR607188878,36211.8M5.5Mb2018-01-23
SRR607188973,35411.1M5.2Mb2018-01-23
SRR607189071,93810.9M5.2Mb2018-01-23

ID:
4522402

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