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SRX3173854: GSM2778749: d002_non-adherent_us1_infected.TTTCAGA; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 28.4M spots, 1.4G bases, 464.4Mb downloads

Submitted by: NCBI (GEO)
Study: Human primary macrophages derived in vitro from circulating monocytes comprise adherent and non-adherent subsets with differential expression of Siglec-1 and CD4 and permissiveness to HIV-1 infection
show Abstracthide Abstract
Macrophages are a major target for human immunodeficiency virus type 1 (HIV-1) infection. However, macrophages are largely heterogeneous and may exhibit differences in permissiveness to HIV-1 infection. This study highlights the interplay of macrophage heterogeneity in HIV-1 pathogenesis. We show that monocyte-derived macrophages (MDM) could be divided into two distinct subsets: CD14+Siglec-1hiCD4+ (non-adherent MDM), and CD14+Siglec-1LoCD4- (adherent MDM). The CD14+Siglec-1hiCD4+MDM subset represented the smaller proportion in the macrophage pool, and varied among different donors. Fractionation and subsequent exposure of the two MDM subsets to HIV-1 revealed opposite outcomes in terms of HIV-1 capture and infection. Although the CD14+Siglec-1hiCD4+MDM captured significantly more HIV-1, infection was significantly higher in the CD14+Siglec-1LoCD4-MDM subset. Thus, CD14+Siglec-1hiCD4+MDM were less permissive to infection. Depletion of CD14+Siglec-1hiCD4+MDM or a decrease in their percentage, resulted in increased infection of MDM, suggestive of a capacity of these cells to capture and sequester HIV-1 in an environment that hinders its infectivity. Increased expression of innate restriction factors and cytokine genes were observed in the non-adherent CD14+Siglec-1hiCD4+MDM, both before and after HIV-1 infection, compared to the adherent CD14+Siglec-1LoCD4-MDM. The differential expression of gene expression profiles in the two macrophage subsets may provide an explanation for the differences observed in HIV-1 infectivity. Overall design: Adherent and non-adherant MDM that were either uninfected or infected with HIV-1 from 3 different PBMC donors were evaluated.
Sample: d002_non-adherent_us1_infected.TTTCAGA
SAMN07626347 • SRS2503771 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: RNA was isolated from uninfected and HIV-1 infected MDM using the Qiagen RNeasy Mini Kit Clontech Smarter
Experiment attributes:
GEO Accession: GSM2778749
Links:
Runs: 1 run, 28.4M spots, 1.4G bases, 464.4Mb
Run# of Spots# of BasesSizePublished
SRR602310328,399,2201.4G464.4Mb2018-02-22

ID:
4475473

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