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SRX3120249: GSM2752224: DMH-D-Fed-125; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 18.3M spots, 917M bases, 437.1Mb downloads

Submitted by: NCBI (GEO)
Study: Transcriptomic response to 24-hour food deprivation in four hypothalamic nuclei in Snord116 deletion mice
show Abstracthide Abstract
Mice with a congenital Snord116 deletion model aspects of the Prader-Willi Syndrome. In this study, we examine the gene expression changes in four hypothalamic nuclei across 24-hour food deprived versus ad libitum fed mice. Overall design: Using mice with paternal deletion of the Snord116 cluster, we laser-captured microdissected four hypothalamic nuclei for RNA sequencing: the ventromedial hypothalamus (VMH), arcuate nucleus (ARC), dorsomedial hypothalamus (DMH) and paraventricular nucleus (PVN). Samples were taken from male mice in either the fed or 24-hour fasted state.
Sample: DMH-D-Fed-125
SAMN07548290 • SRS2455108 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Hypothalamic nuclei were laser-capture microdissection from cryosections using a P.A.L.M Microlaser system, and RNA extracting using the miRNeasy micro RNA extraction kit (Qiagen). Total RNA was amplified using an Ovation RNA-Seq System V2 (NuGEN), after which cDNA libraries were prepared using the Encore Rapid DR Multiplex System (NuGEN).
Experiment attributes:
GEO Accession: GSM2752224
Links:
Runs: 1 run, 18.3M spots, 917M bases, 437.1Mb
Run# of Spots# of BasesSizePublished
SRR596215518,340,759917M437.1Mb2018-01-02

ID:
4414271

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