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SRX2941120: GSM2677645: ChIP-seq_S28P of shMSK1 cells; Homo sapiens; ChIP-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 40.3M spots, 2G bases, 912.8Mb downloads

Submitted by: NCBI (GEO)
Study: MSK1 regulates luminal cell differentiation and metastatic dormancy in breast cancer
show Abstracthide Abstract
For many breast cancer (BCa) patients, symptomatic bone metastases appear after years or even decades of la­tency. How metastatic cells disseminate, and how micromet­astatic lesions remain dormant and undetectable yet initiate colonization, are major questions in cancer research. Here we identify and func­tionally analyse a molecular mechanism involved in bone metastatic latency of estrogen receptor–positive (ER)+ BCa. We developed an in vivo loss-of-function, genome-wide shRNA screening to identify genes relevant for long-latent relapse in BCa. This screen revealed the kinase MSK1 as an important regulator of metastatic dormancy. Importantly, low MSK1 expression associates with early metastasis in ER+ BCa patients. Reduced MSK1 levels impaired cellular differentiation and increased the bone homing and growth capacity of metastatic cells. MSK1 modulates chromatin status at promoters to regulate the expression of luminal differentiation genes, including those for the GATA-3 and FOXA1 transcription fac­tors, which prevent the progression of ER+ BCa towards metastasis. Our results identify the regulation of luminal cell differentiation by MSK1 via modulation of chromatin remodelling to be a key mechanism for controlling metastatic dormancy in BCa. We propose that MSK1 could be a useful marker for stratifying BCa patients as high- or low-risk for early relapse, allowing patients to receive appropriate treatments. Overall design: 4 samples were analysed, 2 shControl samples for each of the phosphorylation sites (S10P and S28P) and 2 samples of the shMSK1 for each of the phosphorylation sites. In addition, for the shControl and shMSK1 Input-DNA was used.
Sample: ChIP-seq_S28P of shMSK1 cells
SAMN07260875 • SRS2302222 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2500
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Construction protocol: DBM shCTRL and shMSK1 cells were trypsinised and crosslinked in 1% formaldehyde for 10 min at RT. rosslinking was quenched with 0.125 M glycine. Pelleted cells were lysed in 1 ml ChIP buffer (150 mM NaCl, 10 mM Tris-HCl, 5 mM EDTA, 1% SDS, 0.5 mM DTT and 1% Triton X-100) and sonicated for 20 min in a Bioruptor Pico (Diagenode). Sequencing libraries were prepared using NEBNext Ultra DNA Library Prep Kit for Illumina (E7370L) following manufacturer's instruction. Antibodies used for ChIP were: H3S10p (Abcam ab5176), H3S28p (Sigma-Aldrich H9908)
Experiment attributes:
GEO Accession: GSM2677645
Links:
Runs: 1 run, 40.3M spots, 2G bases, 912.8Mb
Run# of Spots# of BasesSizePublished
SRR572515540,258,2762G912.8Mb2017-11-15

ID:
4196621

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