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SRX2831285: GSM2629909: HA4POS; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 3000) run: 17.4M spots, 2.6G bases, 1.1Gb downloads

Submitted by: NCBI (GEO)
Study: Whole transcriptome profile of citrulline-specific B cells from patients with rheumatoid arthritis
show Abstracthide Abstract
Although the contribution of B-cell derived autoreactive antibodies to rheumatoid arthritis (RA) has been studied extensively, the autoantibody-independent roles of B cells in the progression of the disease is not well-defined. By utilizing whole transcriptome profiling of human citrulline-specific B cells, we identified diverse inflammatory pathways, cytokines and transcriptional programs that define the biological role of B cells in RA and identify targets for drug intervention. Significantly, we identified the restricted expression of IL15Ra on citrulline-specific B cells and also demonstrated that B cells can express the epidermal growth factor amphiregulin (AREG) under inflammatory conditions. Mechanistically, we demonstrate that AREG has a direct impact on the cellular effectors of RA; it increases the proliferation and invasiveness of RA fibroblast-like synoviocytes (FLS) and synergizes with ACPA to enhance differentiation of osteoclasts. Overall, we present the first comprehensive transcriptome profile of autoreactive B-cell in an autoimmune disease, which can serve as a foundational dataset for studying the multi-faceted roles of B cells in autoimmune diseases Overall design: Whole transcriptome profile of CCP-specific B cells (RA-CCPPOS) with that of CCP-negative B cells (RA-CCPNEG) from the same donor and hemagglutinin-specific (HAPOS) B cells from healthy individuals elicited upon vaccination with seasonal influenza virus
Sample: HA4POS
SAMN07137228 • SRS2206328 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 3000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Antigen-specific B cells were sorted from PBMCs from patients' blood directly into lysis buffer and RNA was isolated using RNA isolation kit (Macherey-Nagel, RNA-XS). cDNA libraries were synthesized using the commercially available SMART-Seq Ultra Low Input RNA kit (Clontech), cDNA libraries were first tagmented and then barcoded by indexing primers using the Nextra XT kit (Illumina)
Experiment attributes:
GEO Accession: GSM2629909
Links:
Runs: 1 run, 17.4M spots, 2.6G bases, 1.1Gb
Run# of Spots# of BasesSizePublished
SRR557260717,390,0722.6G1.1Gb2018-11-17

ID:
4067439

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