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SRX2734045: GSM2575746: BL3 rep1; Bos taurus; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 17.9M spots, 911.1M bases, 296.5Mb downloads

Submitted by: NCBI (GEO)
Study: miR-126-5p by direct targeting of JNK-interacting protein-2 (JIP-2) plays a key role in Theileria-infected macrophage virulence
show Abstracthide Abstract
Theileria annulata is an apicomplexan parasite that infects and transforms bovine macrophages that disseminate throughout the animal causing a leukaemia-like disease called tropical theileriosis. Using deep RNAseq of T. annulata-infected B cells and macrophages we identify a set of microRNAs induced by infection, whose expression diminishes upon loss of the hyper-disseminating phenotype of virulent transformed macrophages. We describe how infection-induced upregulation of miR-126-5p ablates JIP-2 expression to release cytosolic JNK to translocate to the nucleus and trans-activate AP-1-driven transcription of mmp9 to promote tumour dissemination. In non-disseminating attenuated macrophages miR-126-5p levels drop, JIP-2 levels increase, JNK1 is retained in the cytosol leading to decreased c-Jun phosphorylation and dampened AP-1-driven mmp9 transcription. We show that variation in miR-126-5p levels depends on the tyrosine phosphorylation status of AGO2 that is regulated by Grb2-recruitment of PTP1B. In attenuated macrophages Grb2 levels drop resulting in less PTP1B recruitment, greater AGO2 phosphorylation, less miR-126-5p associated with AGO2 and a consequent rise in JIP-2 levels. Changes in miR-126-5p levels therefore, underpin both the virulent hyper-dissemination and the attenuated dissemination of T. annulata-infected macrophages. Overall design: miRNA profiles of Theileria infected and uninfected cells were generated in triplicate using Illumina HiSeq4000
Sample: BL3 rep1
SAMN06711905 • SRS2121940 • All experiments • All runs
Organism: Bos taurus
Library:
Instrument: Illumina HiSeq 4000
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Total RNA of Theileria-infected leukocytes was isolated using the miRNA isolation kit (Thermo fisher scientific #AM1560) according to the manufacturer’s instructions. The quality and quantity of RNA was measured by Nanodrop spectrophotometer. Total RNA designated for miRNA experiments was extracted using the mirVana miRNA isolation kit (Thermo Fisher) using the manufacturer’s instructions. The quantity and quality checked by Qubit and Bioanalyzer 2100, respectively. The miRNA libraries were prepared using the Truseq Small RNA Sample Preparation kit following the manufacturer’s instructions. Briefly, 1 μg of total RNA was adapter ligated at the 3’ and 5’ ends, reverse transcribed, barcoded then amplified with 11 PCR reactions. Then the cDNA was run on a 6% TBE PAGE gel (Novex, Life Technologies). After staining with SYBR Green the gel is visualized on a UV transluminator (Doc-It imaging system, UVP) and the cDNA constructs of a size between 145-160 bp were cut out and eluted from the gel, concentrated and the libraries validated, quantified and finally pooled.
Experiment attributes:
GEO Accession: GSM2575746
Links:
Runs: 1 run, 17.9M spots, 911.1M bases, 296.5Mb
Run# of Spots# of BasesSizePublished
SRR544501417,863,824911.1M296.5Mb2018-03-22

ID:
3938257

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