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SRX25041268: GSM8350182: CD11b cells from the brain, 85 wk mock 3; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 48.3M spots, 14.6G bases, 4.4Gb downloads

External Id: GSM8350182_r1
Submitted by: University of Western Ontario
Study: West Nile Virus-induced expression of senescent gene Lgals3bpregulates microglial phenotype within cerebral cortex
show Abstracthide Abstract
Microglia, the resident macrophages of the central nervous system, exhibit altered gene expression in response to various neurological conditions. This study investigates the relationship between West Nile Virus infection, and microglial senescence, focusing on the role of LGALS3BP, a protein implicated in both antiviral responses and aging. Using spatial transcriptomics, RNA sequencing and flow cytometry, we characterized changes in microglial gene signatures in adult and aged mice following recovery from WNV encephalitis. Additionally, we analyzed Lgals3bp expression and generated Lgals3bp-deficient mice to assess the impact on neuroinflammation and microglial phenotypes. Our results show that WNV-activated microglia share transcriptional signatures with aged microglia, including upregulation of genes involved in interferon response and inflammation. Lgals3bp was broadly expressed in the CNS and robustly upregulated during WNV infection and aging. Lgals3bp-deficient mice exhibited reduced neuroinflammation, increased homeostatic microglial numbers, and altered T cell populations without differences in virologic control or survival. This data indicates that LGALS3BP has a role in regulating neuroinflammation and microglial activation and suggest that targeting LGALS3BP might provide a potential route for mitigating neuroinflammation-related cognitive decline in aging and post-viral infections. Overall design: CD11b+ cells extracted from Murine forebrain 30 days after mock- or West Nile Virus E218A infection of 16 or 85 week old C57BL6/J mice
Sample: CD11b cells from the brain, 85 wk mock 3
SAMN42023504 • SRS21738762 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM8350182
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: QIAGEN RNAeasy Micro Library preparation was performed with 10ng of total RNA with a Bioanalyzer RIN score greater than 8.0. ds-cDNA was prepared using the SMARTer Ultra Low RNA kit for Illumina Sequencing (Takara-Clontech) per manufacturer's protocol. cDNA was fragmented using a Covaris E220 sonicator using peak incident power 18, duty factor 20%, cycles per burst 50 for 120 seconds. cDNA was blunt ended, had an A base added to the 3' ends, and then had Illumina sequencing adapters ligated to the ends. Ligated fragments were then amplified for 12-15 cycles using primers incorporating unique dual index tags.
Runs: 1 run, 48.3M spots, 14.6G bases, 4.4Gb
Run# of Spots# of BasesSizePublished
SRR2953334548,272,54314.6G4.4Gb2024-06-26

ID:
33378520

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