U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX24605964: GSM8279835: ATAC_Sus_MII_oocytes_Rep2; Sus scrofa; ATAC-seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 70.7M spots, 21.2G bases, 6.4Gb downloads

External Id: GSM8279835_r1
Submitted by: Zhanjiang Institute of Clinical Medicine, Central People's Hospital of Zhanjiang
Study: Fosl2 orchestrates chromatin accessibility dynamics to determine mammalian ovarian folliculogenesis [ATAC-seq]
show Abstracthide Abstract
In mammalian ovaries, granulosa cells (GCs) behave as the most active cell lineage in terms of differentiation and proliferation, ensuring precise developmental gene expression pattern and enhancing continuous ovarian folliculogenesis; however, how developing GCs is interplay with downstream transcriptional activation in mammals remain poorly understood. In this research, we depicted the genome-wide redistribution of accessible chromatin regions that lead to broad developmental-related transcriptome effects spanning pig and mouse follicular stages. We report the distinct GCs-activated accessibility regions (GAAs) at MII stage are always distributed on H3K4me3-anchored promoter regions, where they are responsible for elevated flanking development related genes (DRGs) expression, serving as a key requirement for transcription in response to developmental signals. Mechanistically, the transcription factor, Fosl2, can be mightily recruited to GAAs to accomplish chromatin accessibility state transition. The enlarged GAAs signal driven by Fosl2 loading subsequently induces a robust increase in the expression of adjacent DRGs expression, which contribute to the progression of ovarian folliculogenesis. Together, our study delineates the dynamic chromatin accessibility landscape across various stages of folliculogenesis, uncovering a pivotal role for the Fosl2 in controlling the transcriptional activation through the reconfiguration of the widespread chromatin state. Overall design: Paired-end ATAC-seq of oocytes and GCs in pig and mouse to sought the accessible chromatin spanning follicular stages.
Sample: ATAC_Sus_MII_oocytes_Rep2
SAMN41455468 • SRS21343534 • All experiments • All runs
Organism: Sus scrofa
Library:
Name: GSM8279835
Instrument: Illumina NovaSeq 6000
Strategy: ATAC-seq
Source: GENOMIC
Selection: other
Layout: PAIRED
Construction protocol: In brief, a total of 50 oocytes with zona pellucida removed, and 50,000 GCs were lysed respectively in lysis buffer (10 mM Tris-HCl (pH7.4), 10 mM NaCl, 3mM MgCl2, 0.1%Igepal CA-630, 0.1%Tween-20, 0.01%Digitonin, 1% Cytochalasin B, 0.1%collagenase I) for 10 min on ice to generate the nuclei. Nuclei were then spun at 500g for 5 min immediately to remove the supernatant. Tn5 transposome and tagmentation procedures were subjected at 37°C for 30 min (Vazyme, TD501). DNA were purified using 2×AMPure beads (Beckman, A63881) and conducted to 16 cycles (for oocytes) or 14 cycles (for GCs) of library amplification using the following PCR conditions: 72°C for 3 min; 98°C for 30s; and thermocycling at 98 °C for 15s, 60°C for 30 s and 72°C for 3 min; following by 72°C 5 min.The amplified DNA was size-selected using AMPure beads for 200–500bp DNA fragments. All libraries were sequenced by the Novaseq 6000 platform to at least a depth of 4.0×107 reads accordingly.
Runs: 1 run, 70.7M spots, 21.2G bases, 6.4Gb
Run# of Spots# of BasesSizePublished
SRR2908174270,734,17921.2G6.4Gb2024-06-01

ID:
32924726

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...