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SRX246032: GSM1089272: WT_input_2min_rep1_(20110706_2); Caenorhabditis elegans; MNase-Seq
57 ILLUMINA (Illumina HiSeq 2000) runs: 227.8M spots, 11.4G bases, 7Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Holocentromeres are dispersed point centromeres localized at transcription factor hotspots
show Abstracthide Abstract
The centromere is a defining feature of eukaryotic chromosomes and is essential for the segregation of chromosomes during cell division. Centromeres are universally marked by the histone variant cenH3 and are restricted to specialized chromatin that most commonly localized to a single position along the chromosome. However, the DNA on which centromeric nucleosomes assemble is not conserved and varies greatly in size and composition. It ranges from genetically defined point centromeres that assemble a single cenH3-containing nucleosome to epigenetically defined regional centromeres embedded in megabases of tandemly repeated DNA to holocentromeres that extend along the length of the entire chromosomes. The organization of regional and holocentric centromeres has so far been elusive, as the precise locations of cenH3-containing sequences could not be determined. Our results show that the point centromere is the basic unit of holocentromeres and provide a basis for understanding how centromeric chromatin is maintained. Overall design: We use high-resolution mapping of cenH3-associated DNA to show that Caenorhabditids elegans holocentromeres are organized as dispersed but discretely localized point centromeres.
Sample: WT_input_2min_rep1_(20110706_2)
SAMN01931887 • SRS398484 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: MNase-Seq
Source: GENOMIC
Selection: MNase
Layout: PAIRED
Experiment attributes:
GEO Accession: GSM1089272
Links:
External link:
Runs: 57 runs, 227.8M spots, 11.4G bases, 7Gb
Run# of Spots# of BasesSizePublished
SRR7663544,000,000200M125.4Mb2014-04-08
SRR7663554,000,000200M138.5Mb2014-04-08
SRR7663564,000,000200M122.8Mb2014-04-08
SRR7663574,000,000200M123.7Mb2014-04-08
SRR7663584,000,000200M127.7Mb2014-04-08
SRR7663594,000,000200M129Mb2014-04-08
SRR7663604,000,000200M132.2Mb2014-04-08
SRR7663614,000,000200M132.3Mb2014-04-08
SRR7663624,000,000200M133.9Mb2014-04-08
SRR7663634,000,000200M136.6Mb2014-04-08
SRR7663644,000,000200M140.9Mb2014-04-08
SRR7663654,000,000200M125.4Mb2014-04-08
SRR7663664,000,000200M124.4Mb2014-04-08
SRR7663674,000,000200M123.2Mb2014-04-08
SRR7663684,000,000200M126.1Mb2014-04-08
There are 42 omitted runs. See all runs in Run Selector.

ID:
337168

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