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SRX2458897: GSM2443752: W14_root; Manihot esculenta; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 9.7M spots, 504.1M bases, 342.6Mb downloads

Submitted by: NCBI (GEO)
Study: Genome-wide expression of HD-Zip genes in cassava
show Abstracthide Abstract
To reveal the expression of HD-Zip genes in different tissues of cassava, samples from leaf (90 days after planting), stem (90 days after planting), early storage root (ESR, 90 days after planting), middle storage root (MSR, 150 days after planting) and last storage root (LSR, 210 days after planting) were collected for RNA-seq analysis. In addition, their expression was also examined in folded leaf (FL), full expanded leaf (FEL) and bottom leaf (BL), as well as root (RT) at 0, 3, 24 h after the treatment of PEG 6000. Overall design: Examination of gene expression in different tissues of three genotypes, or in leaves and root in response to PEG treatment in cassava
Sample: W14_root
SAMN06198842 • SRS1891848 • All experiments • All runs
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Fresh samples were frozen in liquid nitrogen, and RNA was harvested using Trizol reagent. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM2443752
Links:
Runs: 1 run, 9.7M spots, 504.1M bases, 342.6Mb
Run# of Spots# of BasesSizePublished
SRR51402249,693,871504.1M342.6Mb2019-01-01

ID:
3571259

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