U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX24502522: GSM8259069: C. albicans_60min_SPB00525 _R1; Candida albicans SC5314; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 67.2M spots, 13.6G bases, 4Gb downloads

External Id: GSM8259069_r1
Submitted by: University Laval
Study: Small molecule inhibitors of fungal ?(9) fatty acid desaturase as antifungal agent against Candida auris
show Abstracthide Abstract
Candida auris has emerged as a significant healthcare-associated pathogen, posing a serious challenge due to its multidrug-resistant nature. Given the pre-existing constraints in the discovery and provision of new antifungals, there is thus an urgent imperative to design effective strategies to tackle this pressing global concern. Here, we screened a chemical library and identified phenyl-carbohydrazide derivatives with potent activity against both C. auris and the most prevalent human fungal pathogen, C. albicans. SPB00525 (N'-(2,6-Dichlorophenyl)-5-nitro-2-furohydrazide) exhibited potent activity against different strains that were resistant to standard antifungals. Using drug-induced haploinsufficient profiling, transcriptomics and metabolomic analysis, we uncovered that Ole1, a ?(9) fatty acid desaturase, is most likely the target of SPB00525. We also found that another SPB00525 analog, HTS06170 (N'-(2,6-Dichlorophenyl)-4-methyl-1,2,3-thiadiazole-5-carbohydrazide) had a superior antifungal activity against both C. auris and C. albicans. Both SPB00525 and HTS06170 act as antivirulence agents and inhibited the invasive hyphal growth and biofilm formation of C. albicans. SPB00525 and HTS06170 attenuated fungal damage to human enterocytes and ameliorate survival of Galleria mellonella larvae used as a model of systemic candidiasis. These data, suggest that inhibiting ?(9) fatty acid desaturase activity represents a potential therapeutic approach for treating fungal infection caused by the superbug C. auris and the most prevalent human fungal pathogen, C. albicans. Overall design: In this study, we used RNA-seq to identify transcripts modulated by exposure to a novel antifungal molecule (SPB00525) in two human fungal pathogens: Candida auris and C. albicans. We also used drug-induced haploinsufficient profiling to capture the potential target(s) of SPB00525.
Sample: C. albicans_60min_SPB00525 _R1
SAMN41271779 • SRS21251167 • All experiments • All runs
Library:
Name: GSM8259069
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: For RNA-seq, total RNA was extracted using an RNAeasy purification kit (Qiagen) and glass bead lysis in a Biospec Mini 24 bead-beater. For the drug-induced haploinsufficiency profiling, cells were harvested by centrifugation and genomic DNA was extracted using YeaStar kit (Zymo Research). For RNA-seq, the NEBNext UltraTM II RNA Library Prep Kit for Illumina was used to construct the RNA-seq library. For the drug-induced haploinsufficiency profiling, the Up-tag DNA-barcodes were amplified using 25 ng genomic DNA with DBC-F1 and DBC-R1 primers that recognize the common region of up-tag barcode and contain the multiplexing tag (DBC-F1) and sequences required for hybridization to the Illumina flow cell. PCR amplification products were purified form an agarose gel using the QIAquick Gel Extraction kit (Qiagen) and quantified by QuantiFluor dsDNA System (Promega). Equal quantity of DNA from the SPB00525-treated and non-treated pools were combined prior to NGS sequencing using Illumina MiSeq platform and DBC1 and DBC2 sequencing.
Runs: 1 run, 67.2M spots, 13.6G bases, 4Gb
Run# of Spots# of BasesSizePublished
SRR2897307067,240,83413.6G4Gb2024-05-13

ID:
32819061

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...