GSM2436470: KDM6A WT rep 7; Homo sapiens; RNA-Seq - SRA

SRX2439430: GSM2436470: KDM6A WT rep 7; Homo sapiens; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 78.6M spots, 11.9G bases, 6.8Gb downloads

Submitted by: NCBI (GEO)

Study: Transcriptome analysis for KDM6A mutated urothelial bladder carcinoma and EZH2 inhibitor treated KDM6A mutated urothelial bladder carcinoma

PRJNA358425 • SRP095491 • All experiments • All runs

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Purpose: The goals of this study are to compare 1. The transcription profile in KDM6A wildtype and KDM6A mutated urothelial bladder carcinoma. 2. The transcriptional changes in KDM6A mutated urothelial bladder carcinoma upon EZH2 inhibitor treatment. Overall design: Transcriptome profiling of KDM6A wildtype and KDM6A mutated urothelial bladder carcinoma were generated by deep sequencing, 10 cases in each group, using Hiseq2000. Transcriptome profiling of EZH2 inhibitor-treated KDM6A wildtype and KDM6A mutated urothelial bladder carcinoma were generated by deep sequencing, in triplicate, using Hiseq2000.

Sample: KDM6A WT rep 7

SAMN06173508 • SRS1874046 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: PAIRED

Construction protocol: Retinas were removed, flash frozen on dry ice, and RNA was harvested using Trizol reagent. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used with 1 ug of total RNA for the construction of sequencing libraries. RNA libraries were prepared for sequencing using standard Illumina protocols

Experiment attributes:

GEO Accession: GSM2436470

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 78.6M spots, 11.9G bases, 6.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR5124445	78,557,641	11.9G	6.8Gb	2017-03-01

ID:: 3542787

SRA

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