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SRX24371642: GSM8231215: CORT-Ket (#9968-2); Mus musculus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 66.5M spots, 13.4G bases, 4.8Gb downloads

External Id: GSM8231215_r1
Submitted by: Zou Lab, Biological Sciences, UC San Diego (UCSD)
Study: Planar cell polarity proteins mediate ketamine-induced restoration of glutamatergic synapses in prefrontal cortical neurons in a mouse model for chronic stress
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We performed single cell transcriptomics analyses in medial prefrontal cortical (mPFC) and basolateral amygdala (BLA). Ketamine induced changes in inflammatory pathways reversing corticosterone effects. Cell-cell communication analyses predicted that planar-cell-polarity (PCP) signaling is decreased after corticosterone but increased following ketamine administration in excitatory neurons. Single cell transcriptomics analyses in dorsolateral prefrontal cortical (dl-PFC) neurons of depressed patients also showed decreased PCP signaling in excitatory neurons. Using chemogenetics, we found that the BLA-projecting infra limbic prefrontal cortex (IL PFC) neurons regulate immobility time in the tail suspension test and food consumption. Using RNAScope, we found, in the excitatory neurons in mPFC, Celsrs and Prickle2 were reduced by corticosterone but increased by ketamine. Using CRISPR-Cas9, we conditionally knocked out Celsrs and Prickle2 in the BLA-projecting IL-PFC neurons and found that ketamine-induced synapse restoration and behavioral remission were abolished. Ketamine affects gene expression and PCP proteins underly long-lasting effects of low-dose ketamine. Overall design: C57BL/6J mice exposed to 35 µg/ml of CORT in the drinking water for 6 weeks. A control group received regular drinking water without CORT. After chronic CORT treatment, mice were treated with the fast-acting antidepressant Ket (10 mg/kg, i.p.). 24 h after Ket's treatment, brains were harvested, and the prefrontal cortices were rapidly dissected and processed according to the manufacturer's instructions.
Sample: CORT-Ket (#9968-2)
SAMN41084168 • SRS21128361 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM8231215
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC SINGLE CELL
Selection: cDNA
Layout: PAIRED
Construction protocol: Brains were harvested, and the prefrontal cortices were rapidly dissected and transferred into ice-cold Hibernate A/B27 medium (60 ml Hibernate A medium with 1ml B27 and 0.15 ml Glutamax). The tissues were enzymatically dissociated into single cell suspension, and the cells were captured with the 10X Chromium platform (10X Genomics, Pleasanton, CA). Reverse transcription, cDNA amplification and library construction were performed according to the manufacturer's instructions and used for sequencing.
Runs: 1 run, 66.5M spots, 13.4G bases, 4.8Gb
Run# of Spots# of BasesSizePublished
SRR2880791966,519,46613.4G4.8Gb2024-06-21

ID:
32686461

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