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SRX24195042: GSM8193887: TRG1, fungal biomass, glucose, rep1; Trichoderma reesei; RNA-Seq
1 ILLUMINA (Illumina HiSeq 4000) run: 25M spots, 7.5G bases, 2.3Gb downloads

External Id: GSM8193887_r1
Submitted by: Schilling lab, Plant and Microbial Biology, University of Minnesota
Study: Melanization of fungal necromass drives the upregulation of multiple chitinase, protease, and laccase genes when being degraded by Trichoderma reesei
show Abstracthide Abstract
Fungal necromass in soil represents the stable carbon pools. While fungi are known to decompose fungal necromass, how fungi decomopose melanin, remains poorly understood. Recently, Trichoderma species was found to be one of the most commonly associated fungi in soil, we have used a relevant fungal species, Trichoderma reesei, to characterized Genes involved in the decomposition of melanized and non-melanized necromass from Hyaloscypha bicolor. Overall design: We grew Trichoderma reesei RUT-C30 in liquid cultures with low- and high-melanin necromass and Determined gene expression patterns relative to each other. We also compared the expression pattern to that on glucose carbon source.
Sample: TRG1, fungal biomass, glucose, rep1
SAMN40891603 • SRS20968830 • All experiments • All runs
Library:
Name: GSM8193887
Instrument: Illumina HiSeq 4000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted using TRIzol and PureLink RNA mini kit NEBNext Ultra II RNA Library Prep kit
Runs: 1 run, 25M spots, 7.5G bases, 2.3Gb
Run# of Spots# of BasesSizePublished
SRR2859595325,003,4317.5G2.3Gb2024-05-01

ID:
32506567

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