U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX24017358: GSM8159284: BM110 ∆busR Replicate 3; Streptococcus agalactiae; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 24.5M spots, 1.8G bases, 819.9Mb downloads

External Id: GSM8159284_r1
Submitted by: Hub of Bioinformatics and Biostatistics, Research and Resource Center for Scientific Informatics, Institut Pasteur
Study: Coordinated regulation of osmotic imbalance by c-di-AMP shapes ß-lactam tolerance in Group B Streptococcus
show Abstracthide Abstract
Streptococcus agalactiae is among the few pathogens that have not developed resistance to ß-lactam antibiotics despite decades of clinical use. The molecular basis of this long-lasting susceptibility has not been investigated, and it is uncertain whether specific mechanisms constraint the emergence of resistance. In this study, we first report a conserved role of the signaling nucleotide cyclic-di-AMP in the sensitivity of S. agalactiae to ß-lactam. Specifically, we demonstrate that inactivation of the phosphodiesterase GdpP confers ß-lactam tolerance. Characterizing the signaling pathway revealed an antagonistic regulation by the transcriptional factor BusR, which is activated by c-di-AMP and negatively regulates ß-lactam susceptibility. Furthermore, we show that simultaneous inhibition of osmolyte transporters activity and transcription by c-di-AMP has an additive effect, sustaining ß-lactam tolerance. Finally, transposon mutagenesis for ß-lactam reduced susceptibility reveals a convergent pattern of mutations, including in the KhpAB small RNA chaperone and the protein S immunomodulator. Overall, our findings suggest mechanisms that may foster antibiotic resistance in S. agalactiae and demonstrate that c-di-AMP acts as a turgor pressure rheostat, coordinating an integrated response to cell wall weakening due to ß-lactam activity. Overall design: To investigate the c-di-AMP signaling pathway in Group B Streptococcus, we generated deletion mutants for the c-di-AMP phosphodiesterase GdpP (?gdpP) and for the c-di-AMP regulated transcriptional repressor BusR (?busR) For comparative transcritomic analysis, ?gdpP and ?busR mutants were generated in two wild-type strains: NEM316 (capsular serotype III, CC-23) and BM110 (capsular serotype III, CC-17) RNA are purified from exponentialy growing cultures (OD600 = 0.5) in rich media (THY) incubated at 37°C in static condition. Biological triplicate (Replicate 1, 2, and 3) are done on different days.
Sample: BM110 ∆busR Replicate 3
SAMN40570192 • SRS20812464 • All experiments • All runs
Library:
Name: GSM8159284
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Total RNA are extracted after cell wall mechanical lysis with 0.1 µm beads (Precellys Evolution, Bertin Technologies) in RNApro reagent (MP Biomedicals), and purified by chloroform extraction and ethanol precipitation. Depletion of rRNA (FastSelect Bacterial, Qiagen) and libraries construction ((TruSeq Stranded mRNA, Illumina) are done following manufacturer instructions.
Runs: 1 run, 24.5M spots, 1.8G bases, 819.9Mb
Run# of Spots# of BasesSizePublished
SRR2841298024,505,4331.8G819.9Mb2024-04-25

ID:
32323637

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...