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SRX24005011: scRNA-seq of macaca fascicularis: E58 male FL CD34low
1 ILLUMINA (Illumina NovaSeq 6000) run: 208.1M spots, 62.9G bases, 18.7Gb downloads

Design: Library was constructed using the 10X Genomics Chromium Next GEM Single Cell 5 HT Reagent Kits v.2
Submitted by: Kyoto University
Study: Atlas of Cynomolgus Macaque Hematopoiesis
show Abstracthide Abstract
Self-renewal and differentiation are inherent properties of hematopoietic stem cells that are necessary to support hematopoiesis. However, the underlying mechanisms, especially in human, remain unclear. Here, using the cynomolgus macaque as a surrogate model, we develop a new gating strategy to isolate with high purity transplantable cynomolgus HSCs and generated a single-cell transcriptomic map of cynomolgus HSCs and progenitor cells, that covers the gestational period not analyzed in human. We show that hematopoietic cells from the late-1st to early-3rd trimester fetal liver and late-2nd trimester and thereafter bone marrow has repopulating potential, closely mimicking humans. Unexpectedly however, we found unlike in human, cynomolgus HSCs express CD38 but not CD33, indicating that these cellular counterparts are molecularly distinct. Our transcriptomic analysis reveals the presence of a direct differentiation pathway from HSCs to megakaryocyte lineages, lineage-primed multipotent progenitors and also identified putative HSC surface markers. Taken together, our comprehensive dataset highlights not only the utility of cynomolgus monkeys as model systems to study hematopoiesis but also their potential for translational applications.
Sample: sample10
SAMN40557617 • SRS20801314 • All experiments • All runs
Library:
Name: sample10
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 208.1M spots, 62.9G bases, 18.7Gb
Run# of Spots# of BasesSizePublished
SRR28400257208,119,04562.9G18.7Gb2024-04-26

ID:
32311067

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