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SRX23907357: GSM8141592: AF47A_hBim_S6; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 2000) run: 32.8M spots, 7.3G bases, 2.4Gb downloads

External Id: GSM8141592_r1
Submitted by: The Walter and Eliza Hall Institute
Study: Putting the STING back into BH3-mimetic drugs for TP53 mutant blood cancers
show Abstracthide Abstract
TP53-mutant blood cancers remain a major clinical challenge. BH3-mimetic drugs inhibit BCL-2 pro-survival proteins to promote cancer cell apoptosis. Despite acting downstream of TP53, functional TP53 is required for maximal cancer cell killing by BH3-mimetics through an unknown mechanism. Here, we report TP53 can be activated following BH3-mimetic induced mitochondrial outer membrane permeabilization, which leads to induction of BH3-only proteins, thereby potentiating the pro-apoptotic signal. TP53-deficient lymphomas lack this feed-forward loop, providing opportunities for survival and disease relapse after BH3-mimetic treatment. The therapeutic barrier imposed by defects in TP53 could be overcome by direct activation of the cGAS/STING pathway, which promotes apoptosis of blood cancer cells through TP53-independent BH3-only protein upregulation. Combining clinically relevant STING agonists with BH3-mimetics efficiently killed TP53-mutant mouse B lymphoma, human NK/T lymphoma and acute myeloid leukemia cells. This represents a promising therapy regime that can be fast-tracked to tackle TP53-mutant blood cancers in the clinic. Overall design: To examine the downstream efffects of apoptosis-inducing drugs, mouse Eu-Myc lymphoma cells were treated with the MCL-1 inhibitor S63845 and/or the STING agonist diABZI for 24 h in the presence of caspase inhibitors and RNAseq performed. For STING agonist comparisons, 2 independent Eu-Myc lymphoma cell lines were included. For MCL-1 inhibitor (S63845) comparisons, 3 independent Eu-Myc lymphoma cell lines were included. The study includes parental lymphomas (control, containing Cas9 and a non-targeting sgRNA (hBim)), as well as Trp53 KO and Sting KO derivatives, generated by CRISPR/Cas9.
Sample: AF47A_hBim_S6
SAMN40411863 • SRS20729559 • All experiments • All runs
Organism: Mus musculus
Library:
Name: GSM8141592
Instrument: NextSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: Cell pellets were resuspended in TRIzol reagent (Invitrogen) and RNA extracted according to the manufacturer's instructions. RNA libraries were constructed from 200 ng of RNA per sample using the TruSeq RNA Library Prep Kit v2 (Illumina), according to the manufacturer's instructions.
Runs: 1 run, 32.8M spots, 7.3G bases, 2.4Gb
Run# of Spots# of BasesSizePublished
SRR2829849632,782,2737.3G2.4Gb2024-04-25

ID:
32212381

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