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SRX23409610: GSM8037665: ce_smallRNA_ebax_LateTC_N2_27h; Caenorhabditis elegans; miRNA-Seq
1 ILLUMINA (NextSeq 500) run: 8.4M spots, 427.3M bases, 170.1Mb downloads

External Id: GSM8037665_r1
Submitted by: Computational Biology, Friedrich Miescher Institute for Biomedical Research
Study: Dynamic regulation of miRNA accumulation during C. elegans larval development [miRNA-Seq]
show Abstracthide Abstract
Here, we profile miRNA expression at high temporal resolution (1 hr interval) during C. elegans postembryonic development, which identifies several miRNAs with highly dynamic concentration changes Overall design: Synchronized L1's of N2 and HW3527 (ebax-1(tm2321) IV ) mutant were plated on 10 cm plates (2000 worms/plate) and kept at 25°C for the time-course. Every hour samples were collected from 25h to 42h, extracted RNA, treated with DNAse and subjected to small-RNA sequencing
Sample: ce_smallRNA_ebax_LateTC_N2_27h
SAMN39621670 • SRS20265076 • All experiments • All runs
Library:
Name: GSM8037665
Instrument: NextSeq 500
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: We harvested worms from 25h to 42h in hourly interval. Worms were collected from plates and washed 3 times and resuspended in Tri Reagent (MRC, TR118) and RNA was extracted using Direct-zol™ RNA MicroPrep kit (Zymo Research; R2062) as per manufacturere's instructions. Total RNA was treated with DNAse on column Sequencing libraries were generated using CleanTag Small RNA Library Preparation Kit according to the manufacturer's instructions. The library pool was size selected on a gel (140-160 bp) to enrich for the small RNA fraction. Subsequently, library was sequenced on NextSeq500, as 76 cycles single-end reads.
Runs: 1 run, 8.4M spots, 427.3M bases, 170.1Mb
Run# of Spots# of BasesSizePublished
SRR277442698,378,118427.3M170.1Mb2024-02-22

ID:
31632091

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